Gene detail

Detail information of GWHGAAZE029157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	2.9886E-123	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	4E-24	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	2E-105	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	1E-123	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	2E-93	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8855217	8858055	-
GWHAAZE00000009	mRNA	8855217	8858055	-
GWHAAZE00000009	exon	8855217	8855407	-
GWHAAZE00000009	exon	8855963	8856103	-
GWHAAZE00000009	exon	8856729	8858055	-
GWHAAZE00000009	CDS	8856729	8858055	-
GWHAAZE00000009	CDS	8855963	8856103	-
GWHAAZE00000009	CDS	8855217	8855407	-

Transcript Sequence
>GWHTAAZE029191 ATGGGCTTCCATTTTGGCCTTGTAAACATGATTGCAACTTCAGTGATAATTATAATCACTATATTGAATATCATAGTCTATAAACTTCGACAACTTCACGAAGCAAACTTTGCCAAGAATTCGGATATTTCATCATCCAAACAAATAGCAGAAGTAAACCTTGGCGAGAATTTAGAAGTATTAACACCGCAACAACACCAGGAAGTGAACCTTGGCGAGGATTCAAGCATACCACCGTCCTTGAAATCAGAACAATTATGCCGGCACTTTTCACTTGGTCATATCCTATTGGCCACCAACAACTTTGACGATGCATTAATCATTGGTCACGGTGGATTTGGGAAGGTGTACAAAGGGGTCATCTATGATGGGACAGTTACTGTTGCCATAAAGAGGTTAAGTCCTATGTCCAAACAAGGGGCACCCCAATTTTGGACAGAGGTGGAGTTGCTTTCTAAATTTCGGCACAGCCATCTTGTTTCACTAATTGGTTACTGTAACAATCGCGATGAGATGATACTTGTTTATGAGTACATGGCTTGTGGATCCCTCGCAGATCATTTGTACAAACTTGGTCCGGATGGTAATAATTCTCTAACCTTGTCTTGGGTGCAGCGCTTAAAGATTTGCATTGGGGCAGCACAAGGTTTGGATTACCTTCATACTGGTACAGGTATCCATGATAGGGTCATACATCGTGACTTGAAGAGCTCAAACATTCTATTGGATGATAGCTGGGCAGCTAAGGTATCAGATTTTGGGCTGTCTAAAATAGGCCCCGCAAATCAGTCCGCCTCATCACATGTCAGTACCAACGTCAAAGGCACATTCGGGTATGTGGATCCAGAGTATTTGGTGACCCATAGACTCACTCGAAAGTCTGACGTTTACTCCTTTGGCGTTGTCTTGTTAGAAGTGTTGTCCGGGAGGCGGGCTGTAGATTTAAAACGCTGTGAGGAGCAATGGGGTCTTGCTGGATGGGCCAAAGAATGCATAAAGAAAGGAGAACTAGATCAGATTATTGACCCAAATTTGAGATGGCAAATCTTGCCAAACTCTTTGACAGCATTTGTGAAAATAGCAGATCATTGCTTGCATTATCGTTCGAAAAAGCGCCCTACAATGGCTGAGGTGGTGGCCTCGCTTGAGTCCGCGTTGGCATTGCAAGAGAGAAGAGATTCTTCAATGTTTGAGGCAGATTTTTTGAATTTAGGAGGGACTTTTGACTACCAAGAGAATCTGGATAATTCCTTACTAGAATCCGAGGTGAATAATGGTGGTGATGGTGAGCATCTGGGCGAAGAGATAGATAATATTTTGTCATCTGCAGCAAGTGAAATAAGCAACTTCGAATCCCTACGACATGACTTTGGTAGCATTAGCAGCAACAAGGAATCCCTACAATATGACTTTGTTACTCTTAAGGTTGCGACAGATAATTTCGCTGATGCTAACAAGCTCGGAAATGATCTAATCAAGCGTACAACCTTGGATTGGGAACGGCGTTATAAAATCATAAGAGGTATTGCTCGTGTCAAACCTAGCAACATTCTATTAGATACAGAGCTGAACCCGAAAATTTCTGATTTTTGCTTCGCAAAGATTTGCGATTGGGAAGGAAGTGAACTGTCTGTAACCTATCTTGTGGGGACTAAGTAA

Network for GWHGAAZE029157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	108	382	1.20E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.427
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.099
	SRR3591708	Shoot apex	0.193
	SRR3591709	Stem	0.659
	SRR3591710	White floral bud	0.040
	SRR3591711	White flower	0.167
	SRR3591712	Green floral bud	0.033
	SRR3591713	Yellow flower	0.208
SRP173429	SRR8316895	Juvenile bud stage	0.045
	SRR8316896	Juvenile bud stage	0.007
	SRR8316897	Juvenile bud stage	0.770
	SRR8316894	Third green stage	0.020
	SRR8316900	Third green stage	0.019
	SRR8316901	Third green stage	0.038
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.015
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.011
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.845
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.015
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.006
	CNS0095594	Slightly white alabastrum(diploid) 3	0.026
	CNS0095595	Whole white alabastrum(diploid) 2	0.017
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.309
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.159
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.016
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.169
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.023
	CNS0095610	Silvery flower (tetraploid) 1	0.144
	CNS0095611	Silvery flower (tetraploid) 2	0.036
	CNS0095612	Silvery flower (tetraploid) 3	0.129
	CNS0095613	Golden flower (tetraploid) 1	0.058
	CNS0095614	Golden flower (tetraploid) 2	0.190
	CNS0095615	Golden flower (tetraploid) 3	0.020
CRA001975	CRR073297	Stem 1	0.003
	CRR073298	Stem 2	0.115
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.008
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.024
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.029
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000