Detail information of GWHGAAZE029160


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010674730.10PREDICTED: DNA polymerase zeta catalytic subunit isoform X1 [Beta vulgaris subsp. vulgaris]
COGYP_007312033.11E-53DNA polymerase elongation subunit (family B)
Swissprottr|Q766Z3|REV3_ARATH0DNA polymerase zeta catalytic subunit
trEMBLtr|A0A061F2N6|A0A061F2N6_THECC0DNA polymerase {ECO:0000256|RuleBase:RU000442}
TAIR10AT1G67500.10recovery protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene89049498944494+
GWHAAZE00000009mRNA89049498944494+
GWHAAZE00000009exon89049498905060+
GWHAAZE00000009exon89064508906532+
GWHAAZE00000009exon89099568910013+
GWHAAZE00000009exon89102848910333+
GWHAAZE00000009exon89104538910587+
GWHAAZE00000009exon89130878913155+
GWHAAZE00000009exon89179348918065+
GWHAAZE00000009exon89184318918602+
GWHAAZE00000009exon89186908918781+
GWHAAZE00000009exon89193828919762+
GWHAAZE00000009exon89214188922239+
GWHAAZE00000009exon89227618923094+
GWHAAZE00000009exon89247578924969+
GWHAAZE00000009exon89253208925553+
GWHAAZE00000009exon89261258926489+
GWHAAZE00000009exon89278328927974+
GWHAAZE00000009exon89280518928642+
GWHAAZE00000009exon89291448929290+
GWHAAZE00000009exon89300468930321+
GWHAAZE00000009exon89306298930736+
GWHAAZE00000009exon89318888932093+
GWHAAZE00000009exon89391498939452+
GWHAAZE00000009exon89427848943404+
GWHAAZE00000009exon89443218944494+
GWHAAZE00000009CDS89049498905060+
GWHAAZE00000009CDS89064508906532+
GWHAAZE00000009CDS89099568910013+
GWHAAZE00000009CDS89102848910333+
GWHAAZE00000009CDS89104538910587+
GWHAAZE00000009CDS89130878913155+
GWHAAZE00000009CDS89179348918065+
GWHAAZE00000009CDS89184318918602+
GWHAAZE00000009CDS89186908918781+
GWHAAZE00000009CDS89193828919762+
GWHAAZE00000009CDS89214188922239+
GWHAAZE00000009CDS89227618923094+
GWHAAZE00000009CDS89247578924969+
GWHAAZE00000009CDS89253208925553+
GWHAAZE00000009CDS89261258926489+
GWHAAZE00000009CDS89278328927974+
GWHAAZE00000009CDS89280518928642+
GWHAAZE00000009CDS89291448929290+
GWHAAZE00000009CDS89300468930321+
GWHAAZE00000009CDS89306298930736+
GWHAAZE00000009CDS89318888932093+
GWHAAZE00000009CDS89391498939452+
GWHAAZE00000009CDS89427848943404+
GWHAAZE00000009CDS89443218944494+
Transcript Sequence

Network for GWHGAAZE029160

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03104.20DNA_pol_B_exo1551883.80E-05
PF03104.20DNA_pol_B_exo1107912143.30E-07
PF00136.22DNA_pol_B134417912.30E-99
PF14260.7zf-C4pol183919121.20E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02350REV3L, POLZ Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0000166molecular_functionnucleotide binding
GO:0003676molecular_functionnucleic acid binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.206
SRR3591706second leaf3.389
SRR3591707mature leaf5.467
SRR3591708Shoot apex4.486
SRR3591709Stem4.871
SRR3591710White floral bud7.890
SRR3591711White flower11.444
SRR3591712Green floral bud4.179
SRR3591713Yellow flower10.932
SRP173429 SRR8316895Juvenile bud stage 2.018
SRR8316896Juvenile bud stage 3.037
SRR8316897Juvenile bud stage 2.114
SRR8316894Third green stage 1.389
SRR8316900Third green stage 2.255
SRR8316901Third green stage 2.273
SRR8316898Complete white stage 0.630
SRR8316899Complete white stage 2.432
SRR8316903Complete white stage 1.627
SRR8316902Silver flowering stage0.958
SRR8316904Silver flowering stage1.769
SRR8316905Silver flowering stage0.699
SRR8316906Gold flowering stage 2.490
SRR8316907Gold flowering stage 2.641
SRR8316908Gold flowering stage 2.820
SRP132670SRR6706286Control1.490
SRR6706287Light intensity 50%1.578
SRR6706288Light intensity 20%1.894
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.474
CNS0095593Slightly white alabastrum(diploid) 21.283
CNS0095594Slightly white alabastrum(diploid) 31.267
CNS0095595Whole white alabastrum(diploid) 21.135
CNS0095596Whole white alabastrum(diploid) 31.229
CNS0095597Whole white alabastrum(diploid) 41.045
CNS0095598Silvery flower (diploied) 11.305
CNS0095599Silvery flower (diploied) 21.316
CNS0095600Silvery flower (diploied) 31.614
CNS0095601Golden flower (diploid) 11.416
CNS0095602Golden flower (diploid) 21.736
CNS0095603Golden flower (diploid) 31.767
CNS0095604Slightly white alabastrum(tetraploid) 12.043
CNS0095605Slightly white alabastrum(tetraploid) 21.921
CNS0095606Slightly white alabastrum(tetraploid) 32.828
CNS0095607Whole white alabastrum(tetraploid) 11.728
CNS0095608Whole white alabastrum(tetraploid) 21.948
CNS0095609Whole white alabastrum(tetraploid) 32.583
CNS0095610Silvery flower (tetraploid) 12.913
CNS0095611Silvery flower (tetraploid) 22.349
CNS0095612Silvery flower (tetraploid) 33.123
CNS0095613Golden flower (tetraploid) 11.679
CNS0095614Golden flower (tetraploid) 21.844
CNS0095615Golden flower (tetraploid) 33.170
CRA001975CRR073297Stem 12.264
CRR073298Stem 22.356
CRR073299Stem 30.785
CRR073300Leaf 11.746
CRR073301Leaf 21.559
CRR073302Leaf 30.644
CRR073303Juvenile bud 10.904
CRR073304Juvenile bud 20.447
CRR073305Juvenile bud 30.956
CRR073306Third green 10.417
CRR073307Third green 20.255
CRR073308Third green 30.545
CRR073309Second white 10.159
CRR073310Second white 20.587
CRR073311Second white 30.935
CRR073312Silver flowering 10.401
CRR073313Silver flowering 20.629
CRR073314Silver flowering 30.678
CRR073315Gold flowering 10.411
CRR073316Gold flowering 21.070
CRR073317Gold flowering 30.560
CRR073318Tawny withering 10.486
CRR073319Tawny withering 20.858
CRR073320Tawny withering 30.545