Gene detail

Detail information of GWHGAAZE029191

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283435.1	2.6609E-133	PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera]
trEMBL	tr\|D7SLG2\|D7SLG2_VITVI	1E-133	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16490.3}
TAIR10	AT1G11880.1	5E-95	transferases, transferring hexosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	10270474	10278145	-
GWHAAZE00000009	mRNA	10270474	10278145	-
GWHAAZE00000009	exon	10278036	10278145	-
GWHAAZE00000009	exon	10277489	10277668	-
GWHAAZE00000009	exon	10276165	10276594	-
GWHAAZE00000009	exon	10274146	10274324	-
GWHAAZE00000009	exon	10272634	10272884	-
GWHAAZE00000009	exon	10270474	10270649	-
GWHAAZE00000009	CDS	10278036	10278145	-
GWHAAZE00000009	CDS	10277489	10277668	-
GWHAAZE00000009	CDS	10276165	10276594	-
GWHAAZE00000009	CDS	10274146	10274324	-
GWHAAZE00000009	CDS	10272634	10272884	-
GWHAAZE00000009	CDS	10270474	10270649	-

Transcript Sequence
>GWHTAAZE029225 ATGCTGCAACTGAGTCTGCAAGAGCGAACTCCTATAGGATTGGCCATTGCCTTCCTTCTATTGTGCCTATCTATAGCAGCGTCCTCCAACCCAGCTTATTCCAACACAAGAATCTTTCTTTTGTTTTCCCTAATTGGAGTAGAGCACGGAAGTATTGCTGTGGAAGACTTTGAACTTGAAATTGCTAGTACGTTTGGGAGTAGAACTGTCTTTACTGAGAAGCATGTTGTTGCTGCTGGGTTGTCACAGCTTGGACGTTGTTCCATATTTCTTATTAGAGAAAGGGGAAGAGGTGCATACGATTTGTGCCTGGTTATTCTTTATTTTTACTGTCATTCAATCATGCTTTCAGTTATTGTTTTGAAGGATCCAGAGGCAGCACTGAGGGCATCAATTTTGTTTCGCTTCAATCCCGCTTCCATATTTTACTCATCCATATATTCATCCTATTTGTCTCAGTTCATATTAAAACTGAAAAAACTGAGTGATTGCACTGAGTATAGCTTGGCCTTTGTGATATGCAGATACTCTGAGAGTTTGTATGCTCTTTTATCAATTGGAGGACTGTATCACCTAATTTCTGGTAAAAGCAATTATGCAACACTTTGGCTTGCTCTCTCTGGATCTGCAAGGTCAAATGGGGTGCTAAATGCTGGATATATTTGCTTTCAGACTATGCACCGAGCTTATGATGCTGTCTTTATTAATAAGCGATATTACTTGGCAGTGCAGGTTCTTATCGCGGGAGCTTTGCGTTCTATTTGTGTTTTTGTTCCATTTATTGCTTTTCAAGCATATGGCTACTATAATATTTGTCTTGGGTGTTCTGTGGAGGAAACTAGGCCATGGTGCAAGGCAAGAATTCCTTTGCTGTACAATTTTATTCAGAGTCACTATTGGGGAGTAGGGTTTTTAAGATATTTCCAGCTAAAACAGTTCCCAAATTTCCTACTTGCTTTCCCAATATTGTCACTAGCTGTTTGTTCAATCATCTACTATGCAAAGCTACGAAAGGAGGTTTTTCTCTCACTTGGTTTCCAAGCTTCTCCTGTGGATAAGAAGTCTGCTGCTGTGTTCTTTTCTGTGGGGACAGAGTCAAGATCTAAAATTGAATCTGTTTTAGACAAAGAAACTACTAAAATACGTGAAGAAGATCGTGTTCTGAGACGGAGGAAGCAGAATATAAAAGGAGAGGATCCTGCAACGCTTTCACTCGATAATGATTCAACACACAACAAGCAAGGATATTTGTCGGTTATTGTTCTGCCTTTTCTTTTGCACTTGGGATTCATGTCAGCCCCAGCATTTTTTGTCATGCATGTGCAG

Network for GWHGAAZE029191

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04188.14	Mannosyl_trans2	106	155	6.50E-08
PF04188.14	Mannosyl_trans2	170	442	1.60E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07542	PIGV	Metabolic pathways	map01100
K07542	PIGV	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0004584	molecular_function	obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.859
	SRR3591706	second leaf	0.865
	SRR3591707	mature leaf	2.208
	SRR3591708	Shoot apex	1.264
	SRR3591709	Stem	3.781
	SRR3591710	White floral bud	2.125
	SRR3591711	White flower	1.980
	SRR3591712	Green floral bud	2.701
	SRR3591713	Yellow flower	8.278
SRP173429	SRR8316895	Juvenile bud stage	2.213
	SRR8316896	Juvenile bud stage	2.395
	SRR8316897	Juvenile bud stage	0.869
	SRR8316894	Third green stage	1.729
	SRR8316900	Third green stage	3.730
	SRR8316901	Third green stage	3.428
	SRR8316898	Complete white stage	1.444
	SRR8316899	Complete white stage	4.900
	SRR8316903	Complete white stage	4.004
	SRR8316902	Silver flowering stage	2.577
	SRR8316904	Silver flowering stage	4.400
	SRR8316905	Silver flowering stage	1.637
	SRR8316906	Gold flowering stage	5.655
	SRR8316907	Gold flowering stage	7.462
	SRR8316908	Gold flowering stage	2.566
SRP132670	SRR6706286	Control	1.803
	SRR6706287	Light intensity 50%	1.512
	SRR6706288	Light intensity 20%	1.996
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.550
	CNS0095593	Slightly white alabastrum(diploid) 2	1.757
	CNS0095594	Slightly white alabastrum(diploid) 3	1.750
	CNS0095595	Whole white alabastrum(diploid) 2	1.267
	CNS0095596	Whole white alabastrum(diploid) 3	1.957
	CNS0095597	Whole white alabastrum(diploid) 4	2.361
	CNS0095598	Silvery flower (diploied) 1	2.084
	CNS0095599	Silvery flower (diploied) 2	1.207
	CNS0095600	Silvery flower (diploied) 3	6.527
	CNS0095601	Golden flower (diploid) 1	2.569
	CNS0095602	Golden flower (diploid) 2	5.325
	CNS0095603	Golden flower (diploid) 3	4.575
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.721
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.721
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.862
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.367
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.083
	CNS0095610	Silvery flower (tetraploid) 1	11.856
	CNS0095611	Silvery flower (tetraploid) 2	7.466
	CNS0095612	Silvery flower (tetraploid) 3	7.371
	CNS0095613	Golden flower (tetraploid) 1	13.336
	CNS0095614	Golden flower (tetraploid) 2	10.564
	CNS0095615	Golden flower (tetraploid) 3	23.264
CRA001975	CRR073297	Stem 1	1.309
	CRR073298	Stem 2	0.904
	CRR073299	Stem 3	0.575
	CRR073300	Leaf 1	1.438
	CRR073301	Leaf 2	0.905
	CRR073302	Leaf 3	0.730
	CRR073303	Juvenile bud 1	0.930
	CRR073304	Juvenile bud 2	0.485
	CRR073305	Juvenile bud 3	0.993
	CRR073306	Third green 1	0.300
	CRR073307	Third green 2	0.470
	CRR073308	Third green 3	0.502
	CRR073309	Second white 1	0.339
	CRR073310	Second white 2	0.216
	CRR073311	Second white 3	0.945
	CRR073312	Silver flowering 1	0.009
	CRR073313	Silver flowering 2	0.010
	CRR073314	Silver flowering 3	0.169
	CRR073315	Gold flowering 1	1.208
	CRR073316	Gold flowering 2	1.224
	CRR073317	Gold flowering 3	0.763
	CRR073318	Tawny withering 1	1.164
	CRR073319	Tawny withering 2	0.686
	CRR073320	Tawny withering 3	0.843