Gene detail

Detail information of GWHGAAZE029243

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008454050.1	0	PREDICTED: 26S protease regulatory subunit 6A homolog isoform X1 [Cucumis melo]
COG	YP_004484433.1	5E-97	proteasome-activating nucleotidase
Swissprot	tr\|Q9SEI2\|PS6AA_ARATH	0	26S protease regulatory subunit 6A homolog A
trEMBL	tr\|A0A072UIN9\|A0A072UIN9_MEDTR	0	26S proteasome regulatory particle triple-A ATPase protein {ECO:0000313\|EMBL:KEH29296.1}
TAIR10	AT3G05530.1	0	regulatory particle triple-A ATPase 5A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	14607018	14613499	+
GWHAAZE00000009	mRNA	14607018	14613499	+
GWHAAZE00000009	exon	14607018	14607140	+
GWHAAZE00000009	exon	14607248	14607364	+
GWHAAZE00000009	exon	14608939	14609046	+
GWHAAZE00000009	exon	14609385	14609576	+
GWHAAZE00000009	exon	14609678	14609869	+
GWHAAZE00000009	exon	14611528	14611646	+
GWHAAZE00000009	exon	14611765	14611786	+
GWHAAZE00000009	exon	14612264	14612383	+
GWHAAZE00000009	exon	14612474	14612572	+
GWHAAZE00000009	exon	14613422	14613499	+
GWHAAZE00000009	CDS	14607018	14607140	+
GWHAAZE00000009	CDS	14607248	14607364	+
GWHAAZE00000009	CDS	14608939	14609046	+
GWHAAZE00000009	CDS	14609385	14609576	+
GWHAAZE00000009	CDS	14609678	14609869	+
GWHAAZE00000009	CDS	14611528	14611646	+
GWHAAZE00000009	CDS	14611765	14611786	+
GWHAAZE00000009	CDS	14612264	14612383	+
GWHAAZE00000009	CDS	14612474	14612572	+
GWHAAZE00000009	CDS	14613422	14613499	+

Transcript Sequence
>GWHTAAZE029277 ATGGCGTCGGCCATGGTTGTCGAAGATAGCAGCAGTTTCGAAGACGATCAGCTCGCTTCAATGTCCACCGACGATGTCGTTAGGGCTTCTCGTCTTCTCGATAACGAGATTCGTATCCTCAAGGAAGAGTTGCAAAGGACGAATCTTGAATTGGATTCGATTAAGGAAAAGATAAAGGAGAATCAGGAGAAAATTAAACTCAACAAGCAACTTCCCTACTTGGTCGGCAACATTGTTGAGATATTGGAAATGAACCCAGAGGATGAGGCAGAGGAGGATGGTGCGAATATAGACCTTGACTCACAAAGGAAGGGTAAATGCGTTGTACTAAAAACATCTACACGCCAGACAATCTTCCTGCCCGTGGTTGGTCTTGTTGATCCTGATAAGCTAAAGCCTGGTGATTTGGTTGGTGTGAACAAAGATAGTTACTTGATCTTAGATACCCTTCCATCCGAGTATGATTCTCGAGTCAAGGCAATGGAGGTTGATGAAAAACCAACTGAAGACTATAATGACATTGGGGGTCTTGAGAAGCAGATCCAAGAATTAGTTGAGGCTATTGTTTTGCCCATGACACACCAAGAGAGGTTTCAGAAATTAGGAGTTCGTCCACCCAAAGGAGTACTATTGTATGGACCTCCTGGGACTGGTAAAACTTTAATGGCCCGTGCGTGTGCTGCCCAGACAAACGCTACTTTTCTAAAGCTTGCAGGTCCCCAGCTTGTCCAGATGTTCATTGGAGATGGAGCAAAACTTGTTCGTGATGCTTTTCAGCTTGCAAAAGAAAAATCTCCTTGTATTATCTTTATTGATGAAATTGATGCCATTGGGACAAAGCGATTTGATAGTGAAGTTAGTGGGGATCGGGAGGTGATAGCTGCTACAAATCGAGCTGATATTTTGGACCCTGCACTCATGCGATCTGGTCGACTTGATCGTAAAATTGAGTTTCCCCATCCTACTGAAGAAGCTAGAGCTCGGATCTTGCAGATCCATTCCCGCAAGATGAATGTTCACCCAGACGTGAACTTCGAAGAGTTGGCTCGATCAACTGATGACTTCAATGGAGCACAACTTAAGGCAGTTTGCGTGAACCATGAAGACTTTAATGAAGGTATCATTCAAGTACAAGCAAAGAAGAAAGCAAGCTTGAACTACTACGCATAG

Network for GWHGAAZE029243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16450.6	Prot_ATP_ID_OB	75	151	5.80E-17
PF00004.30	AAA	209	319	2.80E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03065	PSMC3, RPT5	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	173.604
	SRR3591706	second leaf	96.740
	SRR3591707	mature leaf	84.936
	SRR3591708	Shoot apex	147.453
	SRR3591709	Stem	145.027
	SRR3591710	White floral bud	147.925
	SRR3591711	White flower	175.291
	SRR3591712	Green floral bud	154.349
	SRR3591713	Yellow flower	138.456
SRP173429	SRR8316895	Juvenile bud stage	94.492
	SRR8316896	Juvenile bud stage	122.143
	SRR8316897	Juvenile bud stage	55.041
	SRR8316894	Third green stage	51.562
	SRR8316900	Third green stage	152.806
	SRR8316901	Third green stage	138.548
	SRR8316898	Complete white stage	69.375
	SRR8316899	Complete white stage	198.867
	SRR8316903	Complete white stage	111.270
	SRR8316902	Silver flowering stage	65.502
	SRR8316904	Silver flowering stage	89.018
	SRR8316905	Silver flowering stage	39.247
	SRR8316906	Gold flowering stage	156.705
	SRR8316907	Gold flowering stage	145.006
	SRR8316908	Gold flowering stage	155.684
SRP132670	SRR6706286	Control	120.383
	SRR6706287	Light intensity 50%	129.814
	SRR6706288	Light intensity 20%	143.324
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	106.820
	CNS0095593	Slightly white alabastrum(diploid) 2	128.102
	CNS0095594	Slightly white alabastrum(diploid) 3	102.436
	CNS0095595	Whole white alabastrum(diploid) 2	102.365
	CNS0095596	Whole white alabastrum(diploid) 3	87.463
	CNS0095597	Whole white alabastrum(diploid) 4	94.638
	CNS0095598	Silvery flower (diploied) 1	101.484
	CNS0095599	Silvery flower (diploied) 2	95.507
	CNS0095600	Silvery flower (diploied) 3	166.033
	CNS0095601	Golden flower (diploid) 1	93.192
	CNS0095602	Golden flower (diploid) 2	148.289
	CNS0095603	Golden flower (diploid) 3	149.671
	CNS0095604	Slightly white alabastrum(tetraploid) 1	123.381
	CNS0095605	Slightly white alabastrum(tetraploid) 2	108.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	179.788
	CNS0095607	Whole white alabastrum(tetraploid) 1	73.472
	CNS0095608	Whole white alabastrum(tetraploid) 2	73.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	143.513
	CNS0095610	Silvery flower (tetraploid) 1	187.319
	CNS0095611	Silvery flower (tetraploid) 2	175.852
	CNS0095612	Silvery flower (tetraploid) 3	157.731
	CNS0095613	Golden flower (tetraploid) 1	114.763
	CNS0095614	Golden flower (tetraploid) 2	151.558
	CNS0095615	Golden flower (tetraploid) 3	140.071
CRA001975	CRR073297	Stem 1	143.182
	CRR073298	Stem 2	133.118
	CRR073299	Stem 3	179.635
	CRR073300	Leaf 1	158.705
	CRR073301	Leaf 2	148.235
	CRR073302	Leaf 3	177.987
	CRR073303	Juvenile bud 1	185.663
	CRR073304	Juvenile bud 2	168.764
	CRR073305	Juvenile bud 3	199.843
	CRR073306	Third green 1	112.123
	CRR073307	Third green 2	100.772
	CRR073308	Third green 3	103.032
	CRR073309	Second white 1	176.523
	CRR073310	Second white 2	147.659
	CRR073311	Second white 3	125.972
	CRR073312	Silver flowering 1	136.930
	CRR073313	Silver flowering 2	152.247
	CRR073314	Silver flowering 3	121.459
	CRR073315	Gold flowering 1	126.946
	CRR073316	Gold flowering 2	149.305
	CRR073317	Gold flowering 3	138.472
	CRR073318	Tawny withering 1	160.102
	CRR073319	Tawny withering 2	154.354
	CRR073320	Tawny withering 3	175.584