Gene detail

Detail information of GWHGAAZE029247

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011023696.1	4.84258E-63	PREDICTED: 60S ribosomal protein L22-2-like [Populus euphratica]
Swissprot	tr\|Q9M9W1\|RL222_ARATH	2E-61	60S ribosomal protein L22-2
trEMBL	tr\|M5XE65\|M5XE65_PRUPE	2E-63	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19803.1}
TAIR10	AT3G05560.3	3E-44	Ribosomal L22e protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	14886138	14888750	+
GWHAAZE00000009	mRNA	14886138	14888750	+
GWHAAZE00000009	exon	14886138	14886370	+
GWHAAZE00000009	exon	14888080	14888750	+
GWHAAZE00000009	CDS	14886138	14886370	+
GWHAAZE00000009	CDS	14888080	14888224	+
GWHAAZE00000009	three_prime_UTR	14888225	14888750	+

Transcript Sequence
>GWHTAAZE029281 ATGAGTCGAGCGGCAGGTGGGGCCAAGGGAGGGAAAGGGAAGAAGGGATCGACCTTCACGATTGATTGTGGAAAGCCGGTGGAGGATAAGATCATGGAGATTGCATCACTGGAAAAGTTCCTCCAGGAGAGGATCAAGGTCGGCGGCAAGGCCGGTGCTCTCGGTGATTCCGTCACCGTCACTCGTGAGAAGAGCAAAATCACTGTCACTTCTGACAGCAACTTCTCTAAGAGGTATTTGAAGTACTTGACGAAGAAATATCTGAAGAAAAACAATGTTCGCGATTGGCTTAGGGTGATTGCTTCCAACAAGGATCGTAATGTGTACGAACTCAGGTACTTCAACATAGCTGAGAACGAGGGCGAGGAGGAGGATTGATTAGTTGGAGATTGCTGTAGTATTCGTCTACGAGTCCGCTTGTTTTTGTTTCTTAGTCTGTAATTCTTGCCATTTTTAATATTGCTTGCATGGTACTTGTTTTTAAAATTTTGTTTTTGTGGCCCCAAATAGTTTGGATTTTTGTTATTTTTGGTTTCCGATAATATGATACTGCCATTTCTAGATTTAGTTTATGATCTTATTATTTTTTAATGCGCGCGACTCTACCCCAATTCCGATTTAAGAGTCGCATGTTTTAAGAACAATATGTGAAATCATGTGGTACTGTTTGTATTTAGGTTTATGGTTTGGATCTTTCGTTGCTTAGGGCATGTTTGGGAGTTTGATTCTGGATGAAGGTAACAAAAGTAACTAATGTGGTTGTCTCAAAATTATTTAGAAAATTTATTATTTGTCAGTTTGTGTCTCAAATATAATGTCAATGTTAATTGTTCCATGTTTCTTTTAGTCCTTCGAATATTTTATTGTTGGCTTCAAATATTTCTGTTTATCAACTTTACAATTG

Network for GWHGAAZE029247

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01776.18	Ribosomal_L22e	15	123	6.50E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02891	RP-L22e, RPL22	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	238.269
	SRR3591706	second leaf	83.108
	SRR3591707	mature leaf	41.607
	SRR3591708	Shoot apex	288.872
	SRR3591709	Stem	115.410
	SRR3591710	White floral bud	97.386
	SRR3591711	White flower	125.912
	SRR3591712	Green floral bud	212.075
	SRR3591713	Yellow flower	86.210
SRP173429	SRR8316895	Juvenile bud stage	59.583
	SRR8316896	Juvenile bud stage	93.185
	SRR8316897	Juvenile bud stage	104.069
	SRR8316894	Third green stage	39.544
	SRR8316900	Third green stage	137.685
	SRR8316901	Third green stage	128.920
	SRR8316898	Complete white stage	17.520
	SRR8316899	Complete white stage	102.505
	SRR8316903	Complete white stage	28.615
	SRR8316902	Silver flowering stage	22.787
	SRR8316904	Silver flowering stage	17.719
	SRR8316905	Silver flowering stage	9.337
	SRR8316906	Gold flowering stage	32.514
	SRR8316907	Gold flowering stage	40.046
	SRR8316908	Gold flowering stage	79.624
SRP132670	SRR6706286	Control	90.042
	SRR6706287	Light intensity 50%	93.541
	SRR6706288	Light intensity 20%	96.506
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	141.155
	CNS0095593	Slightly white alabastrum(diploid) 2	162.668
	CNS0095594	Slightly white alabastrum(diploid) 3	138.483
	CNS0095595	Whole white alabastrum(diploid) 2	125.048
	CNS0095596	Whole white alabastrum(diploid) 3	134.358
	CNS0095597	Whole white alabastrum(diploid) 4	94.248
	CNS0095598	Silvery flower (diploied) 1	55.534
	CNS0095599	Silvery flower (diploied) 2	55.975
	CNS0095600	Silvery flower (diploied) 3	35.814
	CNS0095601	Golden flower (diploid) 1	44.733
	CNS0095602	Golden flower (diploid) 2	24.947
	CNS0095603	Golden flower (diploid) 3	25.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	117.680
	CNS0095605	Slightly white alabastrum(tetraploid) 2	122.056
	CNS0095606	Slightly white alabastrum(tetraploid) 3	145.848
	CNS0095607	Whole white alabastrum(tetraploid) 1	68.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	63.888
	CNS0095609	Whole white alabastrum(tetraploid) 3	121.140
	CNS0095610	Silvery flower (tetraploid) 1	49.796
	CNS0095611	Silvery flower (tetraploid) 2	25.485
	CNS0095612	Silvery flower (tetraploid) 3	20.248
	CNS0095613	Golden flower (tetraploid) 1	27.011
	CNS0095614	Golden flower (tetraploid) 2	38.549
	CNS0095615	Golden flower (tetraploid) 3	14.252
CRA001975	CRR073297	Stem 1	93.177
	CRR073298	Stem 2	99.117
	CRR073299	Stem 3	94.571
	CRR073300	Leaf 1	97.523
	CRR073301	Leaf 2	106.855
	CRR073302	Leaf 3	134.760
	CRR073303	Juvenile bud 1	103.109
	CRR073304	Juvenile bud 2	75.155
	CRR073305	Juvenile bud 3	69.400
	CRR073306	Third green 1	9.992
	CRR073307	Third green 2	9.226
	CRR073308	Third green 3	12.291
	CRR073309	Second white 1	18.893
	CRR073310	Second white 2	12.001
	CRR073311	Second white 3	6.053
	CRR073312	Silver flowering 1	14.113
	CRR073313	Silver flowering 2	21.304
	CRR073314	Silver flowering 3	13.937
	CRR073315	Gold flowering 1	48.501
	CRR073316	Gold flowering 2	57.426
	CRR073317	Gold flowering 3	47.028
	CRR073318	Tawny withering 1	113.469
	CRR073319	Tawny withering 2	111.068
	CRR073320	Tawny withering 3	117.747