Gene detail

Detail information of GWHGAAZE029264

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011023696.1	4.84258E-63	PREDICTED: 60S ribosomal protein L22-2-like [Populus euphratica]
Swissprot	tr\|Q9M9W1\|RL222_ARATH	2E-61	60S ribosomal protein L22-2
trEMBL	tr\|M5XE65\|M5XE65_PRUPE	2E-63	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19803.1}
TAIR10	AT3G05560.3	3E-44	Ribosomal L22e protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	16270357	16272938	+
GWHAAZE00000009	mRNA	16270357	16272938	+
GWHAAZE00000009	exon	16270357	16270589	+
GWHAAZE00000009	exon	16272255	16272938	+
GWHAAZE00000009	CDS	16270357	16270589	+
GWHAAZE00000009	CDS	16272255	16272399	+
GWHAAZE00000009	three_prime_UTR	16272400	16272938	+

Transcript Sequence
>GWHTAAZE029298 ATGAGTCGAGCGGCAGGTGGGGCCAAGGGAGGGAAAGGGAAGAAGGGATCGACCTTCACGATTGATTGTGGAAAGCCGGTGGAGGATAAGATCATGGAGATTGCATCACTGGAAAAGTTCCTCCAGGAGAGGATCAAGGTCGGCGGCAAGGCCGGTGCTCTCGGTGATTCCGTCACCGTCACTCGTGAGAAGAGCAAAATCACTGTCACTTCTGACAGCAACTTCTCTAAGAGGTATTTGAAGTACTTGACAAAGAAATATCTGAAGAAAAACAATGTTCGCGATTGGCTTAGGGTGATTGCTTCCAACAAGGATCGTAATGTGTACGAACTCAGGTACTTCAACATAGCTGAGAACGAGGGCGAGGAGGAGGATTGATTAGTTGGAGAGATTGCTGTAGTATTCGTCTACGAGTCTCTGCTTGTTTTTGTTTCTTAGTCTGTAATTCTTGCCATTTTTAATACCGCTTGCATGGTACTTGTTTTTAAAATTTTGTTTTTGTGGCCCCAAATAGTTTGGATTTTTGTTATTTTTGGTTTCAGATAATATGCTACTGCCATTTCTAGATCTAGTTTATGATCTTTTTATTTTTTAATTAGCTCAACTCTACCCCAATTCCGATTTAAGAGTCACATGCTTTAAGAACAATATGTGGAATCATGTGGTACTATTTGTATTTAGGTTTGTGGTTTGGATCTTTCGTTGCTTAGGGCATGTTTGGGAGTTTGATTCTGGAGAAAGGTAACAAAAGTAACTAATGTGGTTGTCTAAAAATTATTTTGAAAATTTATTATTGGTCAGTTTGACTCTCAAATGTAATGTCAATGTTAATTGTACCCTGTTCCCCTGTTCCTTTTTAGTCCTTCGAATATTTTATTGTTGGCTTAAAATATTTCTGTTTAACAACTTTACAATTG

Network for GWHGAAZE029264

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01776.18	Ribosomal_L22e	15	123	6.50E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02891	RP-L22e, RPL22	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.009
	SRR3591706	second leaf	8.679
	SRR3591707	mature leaf	4.170
	SRR3591708	Shoot apex	27.602
	SRR3591709	Stem	11.555
	SRR3591710	White floral bud	11.051
	SRR3591711	White flower	13.500
	SRR3591712	Green floral bud	19.980
	SRR3591713	Yellow flower	9.809
SRP173429	SRR8316895	Juvenile bud stage	54.101
	SRR8316896	Juvenile bud stage	79.424
	SRR8316897	Juvenile bud stage	5.043
	SRR8316894	Third green stage	34.926
	SRR8316900	Third green stage	118.825
	SRR8316901	Third green stage	110.590
	SRR8316898	Complete white stage	16.982
	SRR8316899	Complete white stage	83.301
	SRR8316903	Complete white stage	23.440
	SRR8316902	Silver flowering stage	17.397
	SRR8316904	Silver flowering stage	18.160
	SRR8316905	Silver flowering stage	8.480
	SRR8316906	Gold flowering stage	20.960
	SRR8316907	Gold flowering stage	28.255
	SRR8316908	Gold flowering stage	10.915
SRP132670	SRR6706286	Control	78.686
	SRR6706287	Light intensity 50%	86.791
	SRR6706288	Light intensity 20%	91.669
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	108.418
	CNS0095593	Slightly white alabastrum(diploid) 2	127.621
	CNS0095594	Slightly white alabastrum(diploid) 3	114.257
	CNS0095595	Whole white alabastrum(diploid) 2	91.947
	CNS0095596	Whole white alabastrum(diploid) 3	108.696
	CNS0095597	Whole white alabastrum(diploid) 4	74.413
	CNS0095598	Silvery flower (diploied) 1	39.027
	CNS0095599	Silvery flower (diploied) 2	38.519
	CNS0095600	Silvery flower (diploied) 3	23.974
	CNS0095601	Golden flower (diploid) 1	32.908
	CNS0095602	Golden flower (diploid) 2	21.700
	CNS0095603	Golden flower (diploid) 3	19.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	101.430
	CNS0095605	Slightly white alabastrum(tetraploid) 2	103.710
	CNS0095606	Slightly white alabastrum(tetraploid) 3	116.678
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.137
	CNS0095608	Whole white alabastrum(tetraploid) 2	56.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	94.611
	CNS0095610	Silvery flower (tetraploid) 1	36.833
	CNS0095611	Silvery flower (tetraploid) 2	20.394
	CNS0095612	Silvery flower (tetraploid) 3	17.793
	CNS0095613	Golden flower (tetraploid) 1	21.907
	CNS0095614	Golden flower (tetraploid) 2	28.021
	CNS0095615	Golden flower (tetraploid) 3	11.786
CRA001975	CRR073297	Stem 1	82.183
	CRR073298	Stem 2	85.084
	CRR073299	Stem 3	86.571
	CRR073300	Leaf 1	90.672
	CRR073301	Leaf 2	99.247
	CRR073302	Leaf 3	122.631
	CRR073303	Juvenile bud 1	90.602
	CRR073304	Juvenile bud 2	61.018
	CRR073305	Juvenile bud 3	64.282
	CRR073306	Third green 1	8.091
	CRR073307	Third green 2	8.354
	CRR073308	Third green 3	13.113
	CRR073309	Second white 1	14.052
	CRR073310	Second white 2	14.085
	CRR073311	Second white 3	5.467
	CRR073312	Silver flowering 1	12.551
	CRR073313	Silver flowering 2	19.036
	CRR073314	Silver flowering 3	13.260
	CRR073315	Gold flowering 1	41.370
	CRR073316	Gold flowering 2	40.495
	CRR073317	Gold flowering 3	39.480
	CRR073318	Tawny withering 1	99.823
	CRR073319	Tawny withering 2	88.646
	CRR073320	Tawny withering 3	98.524