Gene detail

Detail information of GWHGAAZE029275

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010645085.1	0	PREDICTED: general transcription factor 3C polypeptide 3 [Vitis vinifera]
COG	YP_003269026.1	0.00000009	hypothetical protein
trEMBL	tr\|K4C773\|K4C773_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g063420.2.1}
TAIR10	AT1G17680.2	9E-163	tetratricopeptide repeat (TPR)-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	17361591	17384963	+
GWHAAZE00000009	mRNA	17361591	17384963	+
GWHAAZE00000009	exon	17361591	17361750	+
GWHAAZE00000009	exon	17361838	17361976	+
GWHAAZE00000009	exon	17363531	17363630	+
GWHAAZE00000009	exon	17364266	17364373	+
GWHAAZE00000009	exon	17366390	17366571	+
GWHAAZE00000009	exon	17367320	17367488	+
GWHAAZE00000009	exon	17367969	17368226	+
GWHAAZE00000009	exon	17371298	17371444	+
GWHAAZE00000009	exon	17371928	17372006	+
GWHAAZE00000009	exon	17373530	17373643	+
GWHAAZE00000009	exon	17373736	17373899	+
GWHAAZE00000009	exon	17374614	17374732	+
GWHAAZE00000009	exon	17375027	17375228	+
GWHAAZE00000009	exon	17381502	17381628	+
GWHAAZE00000009	exon	17381829	17381943	+
GWHAAZE00000009	exon	17382081	17382271	+
GWHAAZE00000009	exon	17382365	17382477	+
GWHAAZE00000009	exon	17382563	17382805	+
GWHAAZE00000009	exon	17384505	17384963	+
GWHAAZE00000009	CDS	17361591	17361750	+
GWHAAZE00000009	CDS	17361838	17361976	+
GWHAAZE00000009	CDS	17363531	17363630	+
GWHAAZE00000009	CDS	17364266	17364373	+
GWHAAZE00000009	CDS	17366390	17366571	+
GWHAAZE00000009	CDS	17367320	17367488	+
GWHAAZE00000009	CDS	17367969	17368226	+
GWHAAZE00000009	CDS	17371298	17371444	+
GWHAAZE00000009	CDS	17371928	17372006	+
GWHAAZE00000009	CDS	17373530	17373643	+
GWHAAZE00000009	CDS	17373736	17373899	+
GWHAAZE00000009	CDS	17374614	17374732	+
GWHAAZE00000009	CDS	17375027	17375228	+
GWHAAZE00000009	CDS	17381502	17381628	+
GWHAAZE00000009	CDS	17381829	17381943	+
GWHAAZE00000009	CDS	17382081	17382271	+
GWHAAZE00000009	CDS	17382365	17382477	+
GWHAAZE00000009	CDS	17382563	17382805	+
GWHAAZE00000009	CDS	17384505	17384963	+

Transcript Sequence
>GWHTAAZE029309 ATGGAGGAAAACGAGATAAAACATAATGATAATAATATTATTCCAATTGGAGGAGTTGAGGATAGAGAGGCCGATGATTCGGTCTCTACAGCGGTGATTGTTGCAGAGAGCACTGAGAAGGAGCGGGATCAACGAGACAACAATGATACTAACGACAATGGAGATATGAATCCTTTGGACTTTATTGAGGATGATGCTTTTGGTGTTCAACCATATCAGCGATTTGAACGTCTCGAGCACGAGTACGAAGCTTTGGCTGCTAAGAAGCGTAAAGCACTAGCAGACTCCACTCTTGCTAGTCAAATGCCAGTTAAAAAATTTAGACAAGATGATGTTCTTGAAGCAAGCTTTGAAGAAATATGTGAATCCATGTATGGCAGGAGGAGAAGATCCAGGAAGACTAAGAAAAAAGGGCGGCAGAGAGGATCAAAGAATAAAGTTAGCCCAGAAATCACGCGAAAACTTGGTGATGCTAATCTTCACTACGTGCATGGGCGATTTGAAGAGGCAATACGTTTGTCAGAAGAAGTAATTCTACTTTCACGTAATATGCCTGATCCGTATCACACACTTGGCCTTATCTACAATGCAATGGGTGATAAAAAGAAAGCAACGAATTTCTACATGATTGCTGCGCGTTTGACACCAAAGAATGCATCTCTCTGGAAACTCATCATTGGTTTGTCTAAAGAGCTGGGCAATAGTGGGCAGGCCAATTTCTGCCTTGAAAGAGCAGTAAGTGCTGAACCTGAAGATGTGAGTCTTAGACTTGAGCAAGCTGAACTATATCATGAGGTTGGAGAGTATAAGAAAGCTGCTGAATCATATGAGCAAATTTCTCGACTCTGTCCTGAGAATTTGTATAAACAATGTGGTCAGCATGAGCATGCTGCCAGCATGCTGGAGGACTTCCTTAAAAACAGTCCAAATATAGCTGATCTGCGTGTGGTTTATCTGTTAGCTGTAACACTCATGGAAGCCAATTCACATATGAAAGCTCTACAGCGTATTGAGCTTGCACAGCAGGTCTATTGTGCCGGGAAAGAATTGCCATTAAACTTAGCAGTTAAAGCGGGAATATGTCATCTTCATCTTGGTCACCTAGAGAAAGCAATGGCTATGTTCAGTGTGTTGCGTACGGAGCACACAAACGATCATCCTCAATTATTTATTGAAGTTGGGGACGCATTAATGGGTTTTGAACACTATGATCATGCATTAAAGTATTATATGATGTTGGAAACACATGCCGGATATAACAGTGGCCTTTTATATTCGAACATTGCCCGGTGTCGCCTCTCTCTAAAGGAAAGATTGCGAGCAATTGAGTACTTGTACAAAGCTTTACCTAAACTCAAAGACAGTGTTGATGCTCGGTTGACTCTAGCTTCGCTTCTCCTTGAAGAAGATAAAATTGATGAAGCCATTTCTGTGCTTTCTCCTGCTAATAATTTAGAATCAACGTCTGACAAGAACTCTGATAAAGCTTCACCACCGTGGTGGCTAAATGGGAAAATAAAGTTGATGCTTTCCCGCATCTATAAAGCTAACGGCTCGCTGCAGGCCTTTGTTGATGCAATATATCCATCGGTTCGCATGTCATTATTTCATGAAACTAAGGTCCGAGTGAGGAGGAGGTTACCAAAAAGTGTTCTTATCGAAAGAGCCAAAGTACTAGATGATAGTCAAACTGATAGTGTATTTCAAGGATTCAGACCTTTAGCTTCAACATCAGATCTGTTGAAAGCTGCCAGAGCAAAAAAGTTACTTCAAAAGAGGGAAACAATAAAGGAACAAAAAAGAGCTGCAGCATTAGCTGCAGGGGTTGATTGGAAAAGTGACGATTCGGATGACGAAGTCTCCTGTAAGAAAGTTTATTCCATGAAGGAATTGTATTCCGTTTGTCCTATTCAATCCTTTAGTATTTTGACTGACAATCTGCTATGCAAGGCACTGGCATCCTTGCAAAAATATTGGGAAGCACTTGAGATCATCAGTCTGAGTCTGAAATTTGGTGTCAACACATTATCCGCAGAGAAGAAAGAGGAGCTTAGGTTCCTTGGAGCTCAAATAGCGTACAATTTTGCTGATCCTACATATGGATGGGAGTGTGCACGGGACATTGTTAATCAGCATCCTCACAACTTTGCAGCATGGAATTGCTACTACAAAGTTATATCCAAACTAGAGGATCGGTATACGAAGCATAGCAAGTTCCTGCATGGTATGAGAAACAAACACAGAGATTGTGTACCTCCAACTATCATTTTTGGGCATCAACTCACCATGATAAGCCAACATCAAGCAGCTGCAAGAGAATACTTGGAAGCTTATAAATTGATGCCAGACAGTCCCTTGGTCAATCTCTGCGCGGGAACTGCTTTAATCAACTTAGCCCTCGGGTTGAGACTTCAGAACAAGCATCAGACTCTTACACAGGGTTTAGCATTCCTCTACAACAACTTGCAGCTTTGTGAAAACAGTCAGGAATCATTATATAACATAGCTCGGGCATATCATCATGTTGGTCTAGTTTCTCTTGCAGCTACATATTATGAGAAGGTACTAGCAATTCGTGTCAGTGATTACCCAATCCCCAAGCTACCTACGGAGAATCTGGATCTTGTAGATAGTCGAAAGTTAGGTGGCTATTGTGATCTTCGTAGAGAGGCAGCTTACAACTTGCATTTGATCTATAAAAATAGTGGAGCACTTGACCTTGCTAGGCAGCCAAGAATACAAACACCTAAAATTAAGCATGCTAACAACAAAACACTTGGGAAAAAAAATTGGACCAACAACAAAACACCCAGAAAACAGAACAAGCAAAACACCCAGAAAACAGAACAAGCAAAACACTCAGAAAAAAGAACAAGTACTACAATTCCTGTTGAGAAGCTTGAAGTAAAACTTGGCACCATCCCATGCAAGTCTAATCTTGTCGCCTTTTTTAAGGCCCTTCCTAGTAACCAAATTCTTCTTCCAGTTGCTGGTGAGCACGGAATATTTAGTATTAGCCCACTTGCGAAGGAGAGAATCGACTTCATGAGCCGCGTAACTGAGACATGGAGAGGGAGAGAGAGCCGGTGGACGGAGGTGCACGGTGGAGTGAGAGTGGACAGTGGGTGGAGTGAGAGAGTGGTGAACAGCAGGTGTCGTAAGAGAGAGAGATGGACGGGGAGGGGGTGA

Network for GWHGAAZE029275

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0158

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13181.7	TPR_8	188	218	0.022
PF13432.7	TPR_16	232	278	0.0065
PF13176.7	TPR_7	831	863	0.00073

Protein Sequence

>GWHPAAZE029293
MEENEIKHNDNNIIPIGGVEDREADDSVSTAVIVAESTEKERDQRDNNDTNDNGDMNPLDFIEDDAFGVQPYQRFERLEHEYEALAAKKRKALADSTLASQMPVKKFRQDDVLEASFEEICESMYGRRRRSRKTKKKGRQRGSKNKVSPEITRKLGDANLHYVHGRFEEAIRLSEEVILLSRNMPDPYHTLGLIYNAMGDKKKATNFYMIAARLTPKNASLWKLIIGLSKELGNSGQANFCLERAVSAEPEDVSLRLEQAELYHEVGEYKKAAESYEQISRLCPENLYKQCGQHEHAASMLEDFLKNSPNIADLRVVYLLAVTLMEANSHMKALQRIELAQQVYCAGKELPLNLAVKAGICHLHLGHLEKAMAMFSVLRTEHTNDHPQLFIEVGDALMGFEHYDHALKYYMMLETHAGYNSGLLYSNIARCRLSLKERLRAIEYLYKALPKLKDSVDARLTLASLLLEEDKIDEAISVLSPANNLESTSDKNSDKASPPWWLNGKIKLMLSRIYKANGSLQAFVDAIYPSVRMSLFHETKVRVRRRLPKSVLIERAKVLDDSQTDSVFQGFRPLASTSDLLKAARAKKLLQKRETIKEQKRAAALAAGVDWKSDDSDDEVSCKKVYSMKELYSVCPIQSFSILTDNLLCKALASLQKYWEALEIISLSLKFGVNTLSAEKKEELRFLGAQIAYNFADPTYGWECARDIVNQHPHNFAAWNCYYKVISKLEDRYTKHSKFLHGMRNKHRDCVPPTIIFGHQLTMISQHQAAAREYLEAYKLMPDSPLVNLCAGTALINLALGLRLQNKHQTLTQGLAFLYNNLQLCENSQESLYNIARAYHHVGLVSLAATYYEKVLAIRVSDYPIPKLPTENLDLVDSRKLGGYCDLRREAAYNLHLIYKNSGALDLARQPRIQTPKIKHANNKTLGKKNWTNNKTPRKQNKQNTQKTEQAKHSEKRTSTTIPVEKLEVKLGTIPCKSNLVAFFKALPSNQILLPVAGEHGIFSISPLAKERIDFMSRVTETWRGRESRWTEVHGGVRVDSGWSERVVNSRCRKRERWTGRG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.550
	SRR3591706	second leaf	2.113
	SRR3591707	mature leaf	1.720
	SRR3591708	Shoot apex	2.966
	SRR3591709	Stem	2.762
	SRR3591710	White floral bud	5.051
	SRR3591711	White flower	5.144
	SRR3591712	Green floral bud	4.699
	SRR3591713	Yellow flower	5.937
SRP173429	SRR8316895	Juvenile bud stage	2.174
	SRR8316896	Juvenile bud stage	2.821
	SRR8316897	Juvenile bud stage	0.032
	SRR8316894	Third green stage	1.055
	SRR8316900	Third green stage	1.718
	SRR8316901	Third green stage	2.352
	SRR8316898	Complete white stage	1.061
	SRR8316899	Complete white stage	2.464
	SRR8316903	Complete white stage	1.679
	SRR8316902	Silver flowering stage	1.118
	SRR8316904	Silver flowering stage	1.469
	SRR8316905	Silver flowering stage	0.544
	SRR8316906	Gold flowering stage	1.608
	SRR8316907	Gold flowering stage	2.420
	SRR8316908	Gold flowering stage	0.413
SRP132670	SRR6706286	Control	1.805
	SRR6706287	Light intensity 50%	2.067
	SRR6706288	Light intensity 20%	2.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.401
	CNS0095593	Slightly white alabastrum(diploid) 2	1.757
	CNS0095594	Slightly white alabastrum(diploid) 3	1.735
	CNS0095595	Whole white alabastrum(diploid) 2	1.559
	CNS0095596	Whole white alabastrum(diploid) 3	1.947
	CNS0095597	Whole white alabastrum(diploid) 4	1.682
	CNS0095598	Silvery flower (diploied) 1	1.908
	CNS0095599	Silvery flower (diploied) 2	1.463
	CNS0095600	Silvery flower (diploied) 3	1.859
	CNS0095601	Golden flower (diploid) 1	2.127
	CNS0095602	Golden flower (diploid) 2	2.824
	CNS0095603	Golden flower (diploid) 3	2.720
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.123
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.082
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.494
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.247
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.143
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.299
	CNS0095610	Silvery flower (tetraploid) 1	0.678
	CNS0095611	Silvery flower (tetraploid) 2	0.058
	CNS0095612	Silvery flower (tetraploid) 3	0.159
	CNS0095613	Golden flower (tetraploid) 1	0.100
	CNS0095614	Golden flower (tetraploid) 2	0.646
	CNS0095615	Golden flower (tetraploid) 3	0.284
CRA001975	CRR073297	Stem 1	2.226
	CRR073298	Stem 2	1.619
	CRR073299	Stem 3	1.038
	CRR073300	Leaf 1	1.962
	CRR073301	Leaf 2	1.382
	CRR073302	Leaf 3	1.274
	CRR073303	Juvenile bud 1	0.966
	CRR073304	Juvenile bud 2	0.796
	CRR073305	Juvenile bud 3	1.312
	CRR073306	Third green 1	0.121
	CRR073307	Third green 2	0.237
	CRR073308	Third green 3	0.252
	CRR073309	Second white 1	0.326
	CRR073310	Second white 2	0.842
	CRR073311	Second white 3	0.560
	CRR073312	Silver flowering 1	0.859
	CRR073313	Silver flowering 2	0.264
	CRR073314	Silver flowering 3	0.759
	CRR073315	Gold flowering 1	0.650
	CRR073316	Gold flowering 2	1.472
	CRR073317	Gold flowering 3	0.397
	CRR073318	Tawny withering 1	0.964
	CRR073319	Tawny withering 2	1.225
	CRR073320	Tawny withering 3	1.154