Gene detail

Detail information of GWHGAAZE029304

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008245532.1	6.2678E-163	PREDICTED: serine/threonine-protein phosphatase PP1 isoform X4 [Prunus mume]
COG	YP_008797523.1	1E-41	protein phosphatase
Swissprot	tr\|O82734\|PP18_ARATH	4E-161	Serine/threonine-protein phosphatase PP1 isozyme 8
trEMBL	tr\|F6I4Q1\|F6I4Q1_VITVI	4E-162	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT5G27840.1	6E-129	Calcineurin-like metallo-phosphoesterase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	18045097	18048310	-
GWHAAZE00000009	mRNA	18045097	18048310	-
GWHAAZE00000009	exon	18048293	18048310	-
GWHAAZE00000009	exon	18046059	18046634	-
GWHAAZE00000009	exon	18045097	18045363	-
GWHAAZE00000009	CDS	18048293	18048310	-
GWHAAZE00000009	CDS	18046059	18046634	-
GWHAAZE00000009	CDS	18045097	18045363	-

Transcript Sequence
>GWHTAAZE029338 ATGTACGAGTTCTCGATGTATAATGATCTTACAGGAGATATACATGGACAATACCAAGACCTGTTGAGGGCTTTTGAATACGGCGGCTTCCCTCCAGAAAAAAATTACCTCTTTCTTGGCGATTACGTTGATCGAGGCAAGCAAAGCTTGGAGACTATATGTTTACTATTGGCATACAAAATAAGATACCCCGATCAAGTCTTCCTCTTAAGGGGAAACCACGAAGATGCAAAAATAAACCGGATTTATGGGTTCTATGACGAATGTAAAAGAAGATTTAATGTTCGGCTATGGAAAATATTCACAGACTGCTTTAATTGCTTACCTGTTGCTGCACTCATTGACGAAAAGATAATTTGCATGCATGGTGGACTCTCACCCGACTTGCAAAATTTGGAGCAAATAAATCAAATCGAAAGACCCACTGAGGTTCCGGACAGTGGGTTACTCTGCGATTTGCTTTGGTCTGACCCTGATGCTAGGATCAAGGGTTGGGCAGATAGTGATCGAGGCGTTTCGTGTACTTTTGGAGCTGATATGGTCTTTGAGTTTTTGGAGAAGAATGATCTTGATCTCATTTGCCGTGGTCACCAGGTAGTGGAGGACGGGTACGAGTTCTTTGCTAAACGAAGACTCGTCACAATATTTTCAGCTCCAAATTACGGCGGAGAGTTTGATAATGCAGGTGCTCTATTAAGTGTTGACGAATATCTAGTATGTTCTTTCGAGATATTGAAGCCTCTTGATGTTAAACAATTACCAAGCGGTTCGAAGCCTCTTAAAAAGGTAAAAACATGCATTTTTATTTATGTTCCTATGTTTCTTTCTTCAACTGATGGTTACTTTATCCATCTTTGTTAA

Network for GWHGAAZE029304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	10	199	4.50E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06269	PPP1C	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Platelet activation	map04611
		Insulin signaling pathway	map04910
		Oxytocin signaling pathway	map04921
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Inflammatory mediator regulation of TRP channels	map04750

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.526
	SRR3591706	second leaf	0.173
	SRR3591707	mature leaf	0.121
	SRR3591708	Shoot apex	0.235
	SRR3591709	Stem	0.985
	SRR3591710	White floral bud	9.401
	SRR3591711	White flower	4.829
	SRR3591712	Green floral bud	14.310
	SRR3591713	Yellow flower	6.356
SRP173429	SRR8316895	Juvenile bud stage	2.553
	SRR8316896	Juvenile bud stage	3.559
	SRR8316897	Juvenile bud stage	2.396
	SRR8316894	Third green stage	1.483
	SRR8316900	Third green stage	10.924
	SRR8316901	Third green stage	8.203
	SRR8316898	Complete white stage	2.855
	SRR8316899	Complete white stage	4.152
	SRR8316903	Complete white stage	3.904
	SRR8316902	Silver flowering stage	1.696
	SRR8316904	Silver flowering stage	2.040
	SRR8316905	Silver flowering stage	1.637
	SRR8316906	Gold flowering stage	7.945
	SRR8316907	Gold flowering stage	3.929
	SRR8316908	Gold flowering stage	5.654
SRP132670	SRR6706286	Control	3.717
	SRR6706287	Light intensity 50%	3.349
	SRR6706288	Light intensity 20%	2.720
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.914
	CNS0095593	Slightly white alabastrum(diploid) 2	5.316
	CNS0095594	Slightly white alabastrum(diploid) 3	3.515
	CNS0095595	Whole white alabastrum(diploid) 2	12.973
	CNS0095596	Whole white alabastrum(diploid) 3	11.427
	CNS0095597	Whole white alabastrum(diploid) 4	8.960
	CNS0095598	Silvery flower (diploied) 1	2.057
	CNS0095599	Silvery flower (diploied) 2	1.686
	CNS0095600	Silvery flower (diploied) 3	4.081
	CNS0095601	Golden flower (diploid) 1	2.349
	CNS0095602	Golden flower (diploid) 2	4.275
	CNS0095603	Golden flower (diploid) 3	2.986
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.873
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.383
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.512
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.118
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.461
	CNS0095610	Silvery flower (tetraploid) 1	6.213
	CNS0095611	Silvery flower (tetraploid) 2	4.759
	CNS0095612	Silvery flower (tetraploid) 3	6.366
	CNS0095613	Golden flower (tetraploid) 1	3.415
	CNS0095614	Golden flower (tetraploid) 2	4.827
	CNS0095615	Golden flower (tetraploid) 3	3.743
CRA001975	CRR073297	Stem 1	2.550
	CRR073298	Stem 2	1.342
	CRR073299	Stem 3	0.851
	CRR073300	Leaf 1	5.504
	CRR073301	Leaf 2	5.598
	CRR073302	Leaf 3	3.651
	CRR073303	Juvenile bud 1	4.612
	CRR073304	Juvenile bud 2	5.450
	CRR073305	Juvenile bud 3	2.319
	CRR073306	Third green 1	3.785
	CRR073307	Third green 2	2.810
	CRR073308	Third green 3	4.325
	CRR073309	Second white 1	1.190
	CRR073310	Second white 2	2.766
	CRR073311	Second white 3	1.365
	CRR073312	Silver flowering 1	5.109
	CRR073313	Silver flowering 2	5.520
	CRR073314	Silver flowering 3	2.879
	CRR073315	Gold flowering 1	0.571
	CRR073316	Gold flowering 2	0.827
	CRR073317	Gold flowering 3	0.699
	CRR073318	Tawny withering 1	5.919
	CRR073319	Tawny withering 2	7.989
	CRR073320	Tawny withering 3	3.021