Gene detail

Detail information of GWHGAAZE029329

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004144773.1	4.8935E-115	PREDICTED: 60S ribosomal protein L18-3-like [Cucumis sativus]
COG	NP_126222.1	0.00000007	50S ribosomal protein L18e
Swissprot	tr\|P42791\|RL182_ARATH	7E-111	60S ribosomal protein L18-2
trEMBL	tr\|A0A0A0LFX7\|A0A0A0LFX7_CUCSA	2E-115	Uncharacterized protein {ECO:0000313\|EMBL:KGN60965.1}
TAIR10	AT3G05590.1	1E-87	ribosomal protein L18

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	19030240	19033394	+
GWHAAZE00000009	mRNA	19030240	19033394	+
GWHAAZE00000009	exon	19030240	19030329	+
GWHAAZE00000009	exon	19031555	19031683	+
GWHAAZE00000009	exon	19031780	19031962	+
GWHAAZE00000009	exon	19033239	19033394	+
GWHAAZE00000009	CDS	19030240	19030329	+
GWHAAZE00000009	CDS	19031555	19031683	+
GWHAAZE00000009	CDS	19031780	19031962	+
GWHAAZE00000009	CDS	19033239	19033394	+

Transcript Sequence
>GWHTAAZE029363 GGTATAGATCTAGTAGCCGGGGGCAAGAGCAAGAAGACCAAGCGTACAGCACCTAGGTCTGATGATATTTACCTCAAGCTTATCGTTAAGCTGTATCGATTTTTGGTAAGGAGGACTGGGAGCAACTTCAGTGCTGTGATACTGAAGCGTCTGTTCATGAGCAAGGTCAACAAGCCTGCTATCTCTCTATCAAGATTGTCTCGTTTTATGGAAGGAAAGGAGGGCAAAATTGCTGTGATTGTGGGCACTGTTACTAATGATATTAGGATTCAAGAAGTCCCCAAAATGAAGGTGACTGCTCTAAGGTTTACAGAACAGGCTAGGGCAAGGATTGAGAAGGCTGGTGGAGAGTGCTTAACCTTTGACCAGCTTGCGCTTATTGCTCCACTAGGACAGAACACGGTTCTGCTGAGAGGTCCAAAGAATTCGCGTGAGGCGGTGAAGCACTTTGGGGCACCTGGAGTGCCACACAGCCACAGCAAACCATATGTGCGGTCCAAGGGAAGGAAATTCGAGAAGGCTAGAGGCAAAAGAAACAGCAAGGGTTTTAGGGTTTGA

Network for GWHGAAZE029329

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17135.5	Ribosomal_L18	1	185	1.80E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02883	RP-L18e, RPL18	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.969
	SRR3591706	second leaf	11.909
	SRR3591707	mature leaf	8.138
	SRR3591708	Shoot apex	38.570
	SRR3591709	Stem	17.888
	SRR3591710	White floral bud	1.508
	SRR3591711	White flower	1.057
	SRR3591712	Green floral bud	9.861
	SRR3591713	Yellow flower	1.213
SRP173429	SRR8316895	Juvenile bud stage	110.746
	SRR8316896	Juvenile bud stage	156.110
	SRR8316897	Juvenile bud stage	1.070
	SRR8316894	Third green stage	68.168
	SRR8316900	Third green stage	211.846
	SRR8316901	Third green stage	180.369
	SRR8316898	Complete white stage	24.544
	SRR8316899	Complete white stage	112.881
	SRR8316903	Complete white stage	40.501
	SRR8316902	Silver flowering stage	22.826
	SRR8316904	Silver flowering stage	25.516
	SRR8316905	Silver flowering stage	13.174
	SRR8316906	Gold flowering stage	45.690
	SRR8316907	Gold flowering stage	53.694
	SRR8316908	Gold flowering stage	13.678
SRP132670	SRR6706286	Control	255.878
	SRR6706287	Light intensity 50%	246.014
	SRR6706288	Light intensity 20%	258.310
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	211.563
	CNS0095593	Slightly white alabastrum(diploid) 2	258.812
	CNS0095594	Slightly white alabastrum(diploid) 3	214.195
	CNS0095595	Whole white alabastrum(diploid) 2	183.966
	CNS0095596	Whole white alabastrum(diploid) 3	236.567
	CNS0095597	Whole white alabastrum(diploid) 4	132.659
	CNS0095598	Silvery flower (diploied) 1	91.436
	CNS0095599	Silvery flower (diploied) 2	75.298
	CNS0095600	Silvery flower (diploied) 3	54.939
	CNS0095601	Golden flower (diploid) 1	80.377
	CNS0095602	Golden flower (diploid) 2	57.372
	CNS0095603	Golden flower (diploid) 3	60.945
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.943
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.503
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.184
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.391
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.494
	CNS0095610	Silvery flower (tetraploid) 1	0.182
	CNS0095611	Silvery flower (tetraploid) 2	1.310
	CNS0095612	Silvery flower (tetraploid) 3	0.744
	CNS0095613	Golden flower (tetraploid) 1	1.360
	CNS0095614	Golden flower (tetraploid) 2	0.397
	CNS0095615	Golden flower (tetraploid) 3	0.552
CRA001975	CRR073297	Stem 1	188.420
	CRR073298	Stem 2	210.718
	CRR073299	Stem 3	220.948
	CRR073300	Leaf 1	189.657
	CRR073301	Leaf 2	194.743
	CRR073302	Leaf 3	267.981
	CRR073303	Juvenile bud 1	193.169
	CRR073304	Juvenile bud 2	148.334
	CRR073305	Juvenile bud 3	166.818
	CRR073306	Third green 1	25.182
	CRR073307	Third green 2	27.958
	CRR073308	Third green 3	30.611
	CRR073309	Second white 1	49.164
	CRR073310	Second white 2	28.818
	CRR073311	Second white 3	23.433
	CRR073312	Silver flowering 1	36.294
	CRR073313	Silver flowering 2	53.571
	CRR073314	Silver flowering 3	27.703
	CRR073315	Gold flowering 1	66.417
	CRR073316	Gold flowering 2	82.276
	CRR073317	Gold flowering 3	71.261
	CRR073318	Tawny withering 1	146.138
	CRR073319	Tawny withering 2	139.605
	CRR073320	Tawny withering 3	125.868