Detail information of GWHGAAZE029334


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007031048.10F-box family protein [Theobroma cacao]
COGYP_008032.12E-25hypothetical protein pc1033
Swissprottr|Q8RWU5|FBL3_ARATH4E-123F-box/LRR-repeat protein 3
trEMBLtr|A0A061F2I7|A0A061F2I7_THECC0F-box family protein {ECO:0000313|EMBL:EOY11550.1}
TAIR10AT5G27920.14E-165F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene1936773119376730-
GWHAAZE00000009mRNA1936773119376730-
GWHAAZE00000009exon1936773119367976-
GWHAAZE00000009exon1936938419369678-
GWHAAZE00000009exon1937003019370159-
GWHAAZE00000009exon1937152019371919-
GWHAAZE00000009exon1937229319372397-
GWHAAZE00000009exon1937481519374940-
GWHAAZE00000009exon1937610719376730-
GWHAAZE00000009CDS1937610719376730-
GWHAAZE00000009CDS1937481519374940-
GWHAAZE00000009CDS1937229319372397-
GWHAAZE00000009CDS1937152019371919-
GWHAAZE00000009CDS1937003019370159-
GWHAAZE00000009CDS1936938419369678-
GWHAAZE00000009CDS1936773119367976-
Transcript Sequence

Network for GWHGAAZE029334

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13516.7LRR_665861
PF13516.7LRR_61701931.1
PF13516.7LRR_63493660.56
PF13516.7LRR_64524750.67
PF13516.7LRR_64785010.009
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf57.117
SRR3591706second leaf25.674
SRR3591707mature leaf99.467
SRR3591708Shoot apex49.464
SRR3591709Stem55.577
SRR3591710White floral bud72.688
SRR3591711White flower95.642
SRR3591712Green floral bud46.610
SRR3591713Yellow flower39.027
SRP173429 SRR8316895Juvenile bud stage 51.271
SRR8316896Juvenile bud stage 49.729
SRR8316897Juvenile bud stage 57.778
SRR8316894Third green stage 5.097
SRR8316900Third green stage 11.622
SRR8316901Third green stage 17.318
SRR8316898Complete white stage 19.061
SRR8316899Complete white stage 53.979
SRR8316903Complete white stage 47.675
SRR8316902Silver flowering stage28.277
SRR8316904Silver flowering stage41.483
SRR8316905Silver flowering stage24.174
SRR8316906Gold flowering stage 66.273
SRR8316907Gold flowering stage 59.227
SRR8316908Gold flowering stage 53.557
SRP132670SRR6706286Control14.603
SRR6706287Light intensity 50%13.367
SRR6706288Light intensity 20%12.724
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.333
CNS0095593Slightly white alabastrum(diploid) 244.148
CNS0095594Slightly white alabastrum(diploid) 344.530
CNS0095595Whole white alabastrum(diploid) 234.805
CNS0095596Whole white alabastrum(diploid) 37.389
CNS0095597Whole white alabastrum(diploid) 417.341
CNS0095598Silvery flower (diploied) 146.174
CNS0095599Silvery flower (diploied) 2106.345
CNS0095600Silvery flower (diploied) 3115.012
CNS0095601Golden flower (diploid) 1105.348
CNS0095602Golden flower (diploid) 2164.920
CNS0095603Golden flower (diploid) 3156.532
CNS0095604Slightly white alabastrum(tetraploid) 112.914
CNS0095605Slightly white alabastrum(tetraploid) 210.884
CNS0095606Slightly white alabastrum(tetraploid) 324.418
CNS0095607Whole white alabastrum(tetraploid) 114.346
CNS0095608Whole white alabastrum(tetraploid) 26.173
CNS0095609Whole white alabastrum(tetraploid) 311.316
CNS0095610Silvery flower (tetraploid) 143.359
CNS0095611Silvery flower (tetraploid) 243.741
CNS0095612Silvery flower (tetraploid) 335.150
CNS0095613Golden flower (tetraploid) 137.811
CNS0095614Golden flower (tetraploid) 235.683
CNS0095615Golden flower (tetraploid) 358.216
CRA001975CRR073297Stem 139.273
CRR073298Stem 226.791
CRR073299Stem 318.741
CRR073300Leaf 130.017
CRR073301Leaf 223.293
CRR073302Leaf 314.384
CRR073303Juvenile bud 112.464
CRR073304Juvenile bud 214.200
CRR073305Juvenile bud 326.821
CRR073306Third green 16.523
CRR073307Third green 210.352
CRR073308Third green 39.778
CRR073309Second white 13.448
CRR073310Second white 25.113
CRR073311Second white 310.435
CRR073312Silver flowering 19.774
CRR073313Silver flowering 29.501
CRR073314Silver flowering 312.917
CRR073315Gold flowering 118.312
CRR073316Gold flowering 245.509
CRR073317Gold flowering 314.497
CRR073318Tawny withering 129.792
CRR073319Tawny withering 250.977
CRR073320Tawny withering 335.768