Gene detail

Detail information of GWHGAAZE029335

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17216.1	3.37006E-91	unnamed protein product [Coffea canephora]
Swissprot	tr\|O80494\|P2B15_ARATH	3E-58	F-box protein PP2-B15
trEMBL	tr\|A0A068V9C8\|A0A068V9C8_COFCA	1E-91	Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313\|EMBL:CDP17216.1}
TAIR10	AT1G09155.1	7E-49	phloem protein 2-B15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	19501985	19503562	-
GWHAAZE00000009	mRNA	19501985	19503562	-
GWHAAZE00000009	exon	19501985	19502387	-
GWHAAZE00000009	exon	19502838	19502956	-
GWHAAZE00000009	exon	19503299	19503562	-
GWHAAZE00000009	CDS	19503299	19503562	-
GWHAAZE00000009	CDS	19502838	19502956	-
GWHAAZE00000009	CDS	19501985	19502387	-

Transcript Sequence
>GWHTAAZE029369 ATGGAAGAAACAAGGTTGGAGCATTTGCCTCAAGATTGTATCTCTCATGTCCTTTCTTTCACTTGTCCTCAAGATGTGCACCATTCGTCGCTTGTCTCGTCGGGCATTAGGGACGCATGCGAATCGGAAGCCTTGTGGGAAACATTTCTACCCTCCAATTACCAAGAAATTATCTCGAGATTACTGTCTCCTATGGTGTTCACATCGAAAAGAGAGTTGTTTCACAAACTTTGTAGTCCACATCTTGTTGATGGGGGCAACAAGGCCATCTACTTAGACAAATCAAGTGGTAAGATATGTTATAAATTAAGTGCAAGGGAGCTTCAATTTGCATGGGCAAGCTCTCCTCTCAATTGGTGTTGGAAACACTTCCCTCAATCAAGATTCCCCGAAGTTGTTGAGCTTGTAATGACACATTGCATAGAAATCCACAGCGAGATGAACAACATATTGTTATCACCGAATACGACCTATAAAGTGTATCTCAATGTGAAAATTGCTAGTCGCGCTTATGGTTTAGACTCCCTCCCCTTGCAAGTTTCGATTCAAGTTGGCGATTACCATTCGCTTGAAACCATTTATCTACCATTCTGTGAGGATATGGACAAATCATTGAAGAGCTTTTCTATGATAAATAATGAGAAGGAAGATAAATGGATTGGAATTGAACTATGTGAGTTTTACAATGATGGTAGTGATAAAGAGGTGAAAATGACTTTAAAAGAAATTGATGGTGATCACCTTAAAGGAGGGCTCATAGTAGAGGGAATTGAGCTAAAGACCTAA

Network for GWHGAAZE029335

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	49	8.70E-06
PF14299.7	PP2	98	260	6.30E-38

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.162
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.195
	SRR8316907	Gold flowering stage	0.707
	SRR8316908	Gold flowering stage	0.480
SRP132670	SRR6706286	Control	0.020
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.178
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.105
	CNS0095603	Golden flower (diploid) 3	0.292
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.069
	CNS0095613	Golden flower (tetraploid) 1	0.254
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.878
	CRR073307	Third green 2	0.243
	CRR073308	Third green 3	0.901
	CRR073309	Second white 1	0.924
	CRR073310	Second white 2	0.599
	CRR073311	Second white 3	0.909
	CRR073312	Silver flowering 1	2.865
	CRR073313	Silver flowering 2	2.253
	CRR073314	Silver flowering 3	2.432
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000