Gene detail

Detail information of GWHGAAZE029361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087450.1	9.87028E-56	PREDICTED: pre-mRNA-splicing factor 38 [Sesamum indicum]
Swissprot	tr\|Q8LB54\|PRP38_ARATH	2E-43	Pre-mRNA-splicing factor 38
trEMBL	tr\|M5W7Z5\|M5W7Z5_PRUPE	6E-53	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09867.1}
TAIR10	AT2G40650.1	4E-38	PRP38 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	20270396	20273727	+
GWHAAZE00000009	mRNA	20270396	20273727	+
GWHAAZE00000009	exon	20270396	20270568	+
GWHAAZE00000009	exon	20270765	20270889	+
GWHAAZE00000009	exon	20271011	20271101	+
GWHAAZE00000009	exon	20271275	20271404	+
GWHAAZE00000009	exon	20271501	20271565	+
GWHAAZE00000009	exon	20272630	20272691	+
GWHAAZE00000009	exon	20273267	20273727	+
GWHAAZE00000009	CDS	20270396	20270568	+
GWHAAZE00000009	CDS	20270765	20270889	+
GWHAAZE00000009	CDS	20271011	20271101	+
GWHAAZE00000009	CDS	20271275	20271404	+
GWHAAZE00000009	CDS	20271501	20271565	+
GWHAAZE00000009	CDS	20272630	20272691	+
GWHAAZE00000009	CDS	20273267	20273727	+

Transcript Sequence
>GWHTAAZE029395 ATGGTGTGGAAATTTGAAGGACTTGAGTCCTTTCTTCCCTCCTTACCGTTGCACCCAGGTAACAATGGAACAACCATAGCTTGCTGCAAGTCCCACCCTTGGGTTTGTTCACTTCATAACTATAACCCAAAAGCTACTTTGATTTACTTTACTCTTGAAATACTAAAAATATCCAGATATGTACGGATTCTTGGCACCTTTTATTTGCGTCTTACAGGAACTGATGTTGACGTGTACCGCTATTTGGAGCCTTTGTACAATGACTACCGAAAATTAAGGCGCAAATTAGCTGACGGGAAGTTTGCTCTGACACATATGGATGAGGTTATCGATGAACTTTTGACAAGAGATAATTCCTGTGATATTGCTTTGCCTCGTATCAAGAAAAGATGGACAATTGAAGCCATTGGCACATTGGAGCCGAGGAAAAGTGCACTAGAAGATGATTTTGAGGAGGAAGAAGAAAAAGAAGAGGATGACCAACTCTTGGCTGGATTAGAAAATGGGAGTCCCGATAGGGATTATCATCATGGTCGAAGCCCAGCAAGAGAAAGAGATAGGGATAGAAAACAAGACAGATACAGCTTGGAATTGGTTTATTCGAGTTCTGTGATGAACTGGAATTCAGTGTTTTATAGTGTAAAAGGGACCGAGATTATGATCGAGATTACGAAAGGGATCGAGATTATGATAGGGATCATGGAAGAGGTCGTGACAGGCACCGGGACTATGACCGTGATTGGGACCAAGACCGGGACCATGACCACGACGCGACCGGGACCGCACCATGACCGTGACCGCTATTGGATGAGAGAAGAAAAGGAGTGGTTAGGCAGAGAACGGGACAGGAGGGTCCGGGACCGAGCTAGGCGGAGGAGCCGTTCTAGGAGCCCAAGCTGGAGTAGGGACCGCAAGGAGCGTGATGGCGAGGAGCGGAGTAGGAGACGTGCTCGTAGAAGCACCAGCCCGAGGAGGGCGAGGGGACTGATGATGGAACAACTAAGAAGAAGAAAGAGAAGGAGAAAAAGGAGAAGAAAGACGATGGAACGGATCACCCGGATCCAGAGATTGCTGAAGCGAACCGGCTCCGGGCATCTCTCGGGTTAA

Network for GWHGAAZE029361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03371.16	PRP38	38	134	3.50E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12849	PRPF38A	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.343
	SRR3591706	second leaf	6.756
	SRR3591707	mature leaf	8.443
	SRR3591708	Shoot apex	10.628
	SRR3591709	Stem	8.618
	SRR3591710	White floral bud	32.369
	SRR3591711	White flower	26.984
	SRR3591712	Green floral bud	30.884
	SRR3591713	Yellow flower	19.706
SRP173429	SRR8316895	Juvenile bud stage	44.430
	SRR8316896	Juvenile bud stage	77.974
	SRR8316897	Juvenile bud stage	9.911
	SRR8316894	Third green stage	21.512
	SRR8316900	Third green stage	57.021
	SRR8316901	Third green stage	61.663
	SRR8316898	Complete white stage	12.744
	SRR8316899	Complete white stage	53.123
	SRR8316903	Complete white stage	27.576
	SRR8316902	Silver flowering stage	18.884
	SRR8316904	Silver flowering stage	23.653
	SRR8316905	Silver flowering stage	13.496
	SRR8316906	Gold flowering stage	31.039
	SRR8316907	Gold flowering stage	30.479
	SRR8316908	Gold flowering stage	15.154
SRP132670	SRR6706286	Control	30.741
	SRR6706287	Light intensity 50%	27.484
	SRR6706288	Light intensity 20%	23.407
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.544
	CNS0095593	Slightly white alabastrum(diploid) 2	59.349
	CNS0095594	Slightly white alabastrum(diploid) 3	61.212
	CNS0095595	Whole white alabastrum(diploid) 2	39.711
	CNS0095596	Whole white alabastrum(diploid) 3	33.430
	CNS0095597	Whole white alabastrum(diploid) 4	35.114
	CNS0095598	Silvery flower (diploied) 1	42.641
	CNS0095599	Silvery flower (diploied) 2	63.972
	CNS0095600	Silvery flower (diploied) 3	27.914
	CNS0095601	Golden flower (diploid) 1	82.879
	CNS0095602	Golden flower (diploid) 2	32.153
	CNS0095603	Golden flower (diploid) 3	31.972
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.664
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.377
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.318
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.285
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.090
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.249
	CNS0095610	Silvery flower (tetraploid) 1	9.906
	CNS0095611	Silvery flower (tetraploid) 2	7.203
	CNS0095612	Silvery flower (tetraploid) 3	6.437
	CNS0095613	Golden flower (tetraploid) 1	9.806
	CNS0095614	Golden flower (tetraploid) 2	10.235
	CNS0095615	Golden flower (tetraploid) 3	3.841
CRA001975	CRR073297	Stem 1	34.824
	CRR073298	Stem 2	30.118
	CRR073299	Stem 3	3.670
	CRR073300	Leaf 1	39.250
	CRR073301	Leaf 2	40.094
	CRR073302	Leaf 3	3.705
	CRR073303	Juvenile bud 1	4.632
	CRR073304	Juvenile bud 2	0.741
	CRR073305	Juvenile bud 3	5.612
	CRR073306	Third green 1	0.647
	CRR073307	Third green 2	0.424
	CRR073308	Third green 3	1.142
	CRR073309	Second white 1	0.416
	CRR073310	Second white 2	1.433
	CRR073311	Second white 3	1.153
	CRR073312	Silver flowering 1	0.322
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.272
	CRR073316	Gold flowering 2	5.987
	CRR073317	Gold flowering 3	0.092
	CRR073318	Tawny withering 1	7.375
	CRR073319	Tawny withering 2	13.198
	CRR073320	Tawny withering 3	6.936