Detail information of GWHGAAZE029370


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17228.12.8223E-174unnamed protein product [Coffea canephora]
Swissprottr|Q9SGH2|MBD9_ARATH0.00000003Methyl-CpG-binding domain-containing protein 9
trEMBLtr|A0A068VC44|A0A068VC44_COFCA1E-174Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313|EMBL:CDP17228.1}
TAIR10AT3G05670.14E-78RING/U-box protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2046807020470939+
GWHAAZE00000009mRNA2046807020470939+
GWHAAZE00000009exon2046807020469206+
GWHAAZE00000009exon2047008820470939+
GWHAAZE00000009CDS2046807020469206+
GWHAAZE00000009CDS2047008820470939+
Transcript Sequence

Network for GWHGAAZE029370

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_23083513.50E-07
PF00628.30PHD3994452.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf44.305
SRR3591706second leaf21.022
SRR3591707mature leaf24.873
SRR3591708Shoot apex25.704
SRR3591709Stem54.528
SRR3591710White floral bud44.272
SRR3591711White flower66.250
SRR3591712Green floral bud29.363
SRR3591713Yellow flower82.873
SRP173429 SRR8316895Juvenile bud stage 21.014
SRR8316896Juvenile bud stage 26.312
SRR8316897Juvenile bud stage 13.210
SRR8316894Third green stage 11.797
SRR8316900Third green stage 23.013
SRR8316901Third green stage 25.880
SRR8316898Complete white stage 11.921
SRR8316899Complete white stage 39.566
SRR8316903Complete white stage 27.607
SRR8316902Silver flowering stage21.511
SRR8316904Silver flowering stage32.280
SRR8316905Silver flowering stage17.042
SRR8316906Gold flowering stage 68.448
SRR8316907Gold flowering stage 57.291
SRR8316908Gold flowering stage 74.918
SRP132670SRR6706286Control19.001
SRR6706287Light intensity 50%20.707
SRR6706288Light intensity 20%18.698
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.526
CNS0095593Slightly white alabastrum(diploid) 215.968
CNS0095594Slightly white alabastrum(diploid) 316.256
CNS0095595Whole white alabastrum(diploid) 213.028
CNS0095596Whole white alabastrum(diploid) 310.635
CNS0095597Whole white alabastrum(diploid) 414.026
CNS0095598Silvery flower (diploied) 123.438
CNS0095599Silvery flower (diploied) 223.668
CNS0095600Silvery flower (diploied) 341.430
CNS0095601Golden flower (diploid) 122.441
CNS0095602Golden flower (diploid) 249.451
CNS0095603Golden flower (diploid) 347.213
CNS0095604Slightly white alabastrum(tetraploid) 113.067
CNS0095605Slightly white alabastrum(tetraploid) 211.699
CNS0095606Slightly white alabastrum(tetraploid) 330.000
CNS0095607Whole white alabastrum(tetraploid) 112.086
CNS0095608Whole white alabastrum(tetraploid) 210.633
CNS0095609Whole white alabastrum(tetraploid) 317.482
CNS0095610Silvery flower (tetraploid) 138.088
CNS0095611Silvery flower (tetraploid) 228.482
CNS0095612Silvery flower (tetraploid) 337.852
CNS0095613Golden flower (tetraploid) 128.310
CNS0095614Golden flower (tetraploid) 238.715
CNS0095615Golden flower (tetraploid) 359.318
CRA001975CRR073297Stem 130.917
CRR073298Stem 230.356
CRR073299Stem 324.215
CRR073300Leaf 128.393
CRR073301Leaf 228.648
CRR073302Leaf 319.435
CRR073303Juvenile bud 119.963
CRR073304Juvenile bud 221.505
CRR073305Juvenile bud 322.169
CRR073306Third green 127.308
CRR073307Third green 217.540
CRR073308Third green 327.267
CRR073309Second white 118.393
CRR073310Second white 235.043
CRR073311Second white 336.932
CRR073312Silver flowering 130.054
CRR073313Silver flowering 218.897
CRR073314Silver flowering 326.471
CRR073315Gold flowering 112.566
CRR073316Gold flowering 224.695
CRR073317Gold flowering 35.731
CRR073318Tawny withering 131.759
CRR073319Tawny withering 230.841
CRR073320Tawny withering 327.867