Gene detail

Detail information of GWHGAAZE029372

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759814.1	1.9937E-177	PREDICTED: syntaxin-43-like [Nicotiana sylvestris]
Swissprot	tr\|O65359\|SYP41_ARATH	3E-161	Syntaxin-41
trEMBL	tr\|B7X6S7\|B7X6S7_TOBAC	1E-177	Syntaxin {ECO:0000313\|EMBL:BAH03478.1}
TAIR10	AT5G26980.2	3E-123	syntaxin of plants 41

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	20500850	20506601	+
GWHAAZE00000009	mRNA	20500850	20506601	+
GWHAAZE00000009	exon	20500850	20501043	+
GWHAAZE00000009	exon	20503927	20504203	+
GWHAAZE00000009	exon	20504621	20504710	+
GWHAAZE00000009	exon	20504873	20504950	+
GWHAAZE00000009	exon	20505614	20505679	+
GWHAAZE00000009	exon	20505776	20505856	+
GWHAAZE00000009	exon	20506095	20506601	+
GWHAAZE00000009	CDS	20500850	20501043	+
GWHAAZE00000009	CDS	20503927	20504203	+
GWHAAZE00000009	CDS	20504621	20504710	+
GWHAAZE00000009	CDS	20504873	20504950	+
GWHAAZE00000009	CDS	20505614	20505679	+
GWHAAZE00000009	CDS	20505776	20505856	+
GWHAAZE00000009	CDS	20506095	20506202	+
GWHAAZE00000009	three_prime_UTR	20506203	20506601	+

Transcript Sequence
>GWHTAAZE029406 ATGGCGACGAGGAATAGGACGTTTCTTTACAAGAAGTACAGAGATTCTTTGAAGTCTGTTAGGGTTCCGGCGGGTTATTCGCCGTCAACGAGCGGCGGCGGTGGTGGTCCGGTGATCGAATTGGCTACATCTTCTTTGCTTAATCCCAATAGGGCTTATGTTCCTATTAGTACTGAGGATCCCGGAACATCAAGTAGAGGTGCACTTACAGTTGGTCTACCTCCATCTTGGGTAGATGTTTCGGAAGATATATCAGCAAATGTGCAACGTGTACGAACCAAAATGGCCGAGCTAGCCAAGGCCCATTCGAAGGCTTTAATGCCTTCGTTTGGAGACGATAAAGAAGATCAACGGAAGATCGAAGCTCTAACACATGAAATAACTGATCTCTTAAGAAAATCTGAGAAGAAATTACAGAGGCTTTCTGCTGGTGGACCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGTGCTCTCTGGCCACTGACCTTCAAAGCCTTTCAATGGAACTCCGCAAGAAACAGTCAACTTATTTGAAGCGCCTTCAGCAGCAGAAAGAGGGTCCAGATGGCGTTGATATAGAAATGAACTTAAATGGAAGTCATTCAAGAACGGAGGATGATGAATTTGACGATATAGTTGTTGAATCAGTCAACGATCTTGCGCAAATCATGAAGGATCTTTCAGTCCTTGTGATTGACCAGGGCACTATTGTTGATAGAATAGATTACAACATCCAAAATGTTGCAGCAACAGTCGAGGAGGGCTTTAAACAGCTGCAGAAGGCTGAGAGAACTCAGAAACGGGGTGGGATGGTAACGTGTGCCACGGTTCTTATTATCATGTGCTTTATCATGCTGGTCCTCCTAGTTCTGAAGGAGATACTTTTTTGAGCGGCGAACATAGTTTTCGATAAATCTTGCTACATTCTTACTGTTCTGACCCTCCCCTATAACAATTACGCGCCAAAGAAAAAAAAAAGGCTGGTGTACCATGTCCATTTTTAAAATTTTGTGGGTTGAGTTTTTCATAGATATACAGATGTTCACCTTTTTTTCTCTTCTTCTTTTGGATGTGGTTTCTGTTCTTGTTATCGCGTAATCTGTGGAGGAGGGATGGAGTGTATTCGTAACTGTGCTCCGGGGACTTGTATAGCTCATCATTCTATTGTAATTTGGAGGTGTTATTTTGATTCTTTTCCCTGGGAAATTTTGTAAGAGGAGAGAGTTGCATAACGTTTGTATCTCTTTTGATTACTGAAATGAAGCTTATGATAACAGTTCAGATTTACA

Network for GWHGAAZE029372

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05739.20	SNARE	237	289	2.60E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08489	STX16	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.415
	SRR3591706	second leaf	8.038
	SRR3591707	mature leaf	6.103
	SRR3591708	Shoot apex	8.864
	SRR3591709	Stem	11.437
	SRR3591710	White floral bud	14.560
	SRR3591711	White flower	14.141
	SRR3591712	Green floral bud	13.166
	SRR3591713	Yellow flower	15.877
SRP173429	SRR8316895	Juvenile bud stage	4.581
	SRR8316896	Juvenile bud stage	5.096
	SRR8316897	Juvenile bud stage	3.071
	SRR8316894	Third green stage	3.146
	SRR8316900	Third green stage	9.287
	SRR8316901	Third green stage	9.130
	SRR8316898	Complete white stage	4.504
	SRR8316899	Complete white stage	14.488
	SRR8316903	Complete white stage	7.101
	SRR8316902	Silver flowering stage	5.640
	SRR8316904	Silver flowering stage	6.431
	SRR8316905	Silver flowering stage	3.419
	SRR8316906	Gold flowering stage	11.230
	SRR8316907	Gold flowering stage	10.122
	SRR8316908	Gold flowering stage	10.631
SRP132670	SRR6706286	Control	8.065
	SRR6706287	Light intensity 50%	10.009
	SRR6706288	Light intensity 20%	10.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.628
	CNS0095593	Slightly white alabastrum(diploid) 2	8.648
	CNS0095594	Slightly white alabastrum(diploid) 3	6.048
	CNS0095595	Whole white alabastrum(diploid) 2	6.183
	CNS0095596	Whole white alabastrum(diploid) 3	5.641
	CNS0095597	Whole white alabastrum(diploid) 4	6.271
	CNS0095598	Silvery flower (diploied) 1	8.345
	CNS0095599	Silvery flower (diploied) 2	4.929
	CNS0095600	Silvery flower (diploied) 3	9.661
	CNS0095601	Golden flower (diploid) 1	5.892
	CNS0095602	Golden flower (diploid) 2	7.038
	CNS0095603	Golden flower (diploid) 3	7.786
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.442
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.970
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.918
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.073
	CNS0095610	Silvery flower (tetraploid) 1	8.721
	CNS0095611	Silvery flower (tetraploid) 2	6.412
	CNS0095612	Silvery flower (tetraploid) 3	10.923
	CNS0095613	Golden flower (tetraploid) 1	7.396
	CNS0095614	Golden flower (tetraploid) 2	7.738
	CNS0095615	Golden flower (tetraploid) 3	10.622
CRA001975	CRR073297	Stem 1	8.426
	CRR073298	Stem 2	6.633
	CRR073299	Stem 3	6.333
	CRR073300	Leaf 1	8.882
	CRR073301	Leaf 2	8.842
	CRR073302	Leaf 3	7.563
	CRR073303	Juvenile bud 1	7.876
	CRR073304	Juvenile bud 2	6.057
	CRR073305	Juvenile bud 3	8.703
	CRR073306	Third green 1	9.462
	CRR073307	Third green 2	9.758
	CRR073308	Third green 3	9.172
	CRR073309	Second white 1	10.114
	CRR073310	Second white 2	9.230
	CRR073311	Second white 3	14.851
	CRR073312	Silver flowering 1	8.906
	CRR073313	Silver flowering 2	9.092
	CRR073314	Silver flowering 3	12.427
	CRR073315	Gold flowering 1	4.691
	CRR073316	Gold flowering 2	6.221
	CRR073317	Gold flowering 3	4.310
	CRR073318	Tawny withering 1	8.477
	CRR073319	Tawny withering 2	7.487
	CRR073320	Tawny withering 3	11.151