Gene detail

Detail information of GWHGAAZE029408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008360892.1	0	PREDICTED: translation initiation factor eIF-2B subunit delta-like [Malus domestica]
COG	NP_577851.1	4E-34	translation initiation factor IF-2
trEMBL	tr\|M5WXG3\|M5WXG3_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11490.1}
TAIR10	AT5G38640.1	3E-162	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	21590691	21594750	+
GWHAAZE00000009	mRNA	21590691	21594750	+
GWHAAZE00000009	exon	21590691	21591003	+
GWHAAZE00000009	exon	21592170	21592307	+
GWHAAZE00000009	exon	21592574	21592821	+
GWHAAZE00000009	exon	21592921	21592980	+
GWHAAZE00000009	exon	21593065	21593809	+
GWHAAZE00000009	exon	21593910	21594006	+
GWHAAZE00000009	exon	21594086	21594140	+
GWHAAZE00000009	exon	21594688	21594750	+
GWHAAZE00000009	CDS	21590691	21591003	+
GWHAAZE00000009	CDS	21592170	21592307	+
GWHAAZE00000009	CDS	21592574	21592821	+
GWHAAZE00000009	CDS	21592921	21592980	+
GWHAAZE00000009	CDS	21593065	21593809	+
GWHAAZE00000009	CDS	21593910	21594006	+
GWHAAZE00000009	CDS	21594086	21594140	+
GWHAAZE00000009	CDS	21594688	21594750	+

Transcript Sequence
>GWHTAAZE029442 ATGATAATACCTCCTCGCCACTTCGCCGACAACCTCTCACGTGCCGTAGGCGTGCCTGTCCCTTCCATACGTTTGAGACAGACTTCGATGGATAAACTTACCATTGGTAGCTATAATCCTCCCGACTCCGTCCTTGGCAGCTCGCCGATGATGTCGCCGTCTAGTATGGTTAGGGATGAAAAGTTTTCTGATGAGTCTTCGGTGAATTTGATTCGGAGGAGTAGTTCGGGGAAATTCACTGCTTCGTCTCTTCCGAGTTGTGGATTTGATTTGATGCCGCAAGCGAATAAGGATCGCGGAGTGGTTATTAATGAAGCCGATGGAGAACCAGTTGTAGAAGTGCTGCCGAAATCAAACCCTAAGCCATTGAAAGAGAAAACCACAAAAGCTGAAAGGCGTGCCCTGCAGGAGGCTCAAAGAGCGGCAAAAGCTGCGGAAAAATGTTCAAACAATTACCTTTACTCTGTGTACGTGATTTATGGTATTGGTGGGAGTAGTAAACCTGTTGCTGCTTCCGGGGAAGCGGCTTCAGTACACAAACTAACAGGTAAAGCAGTAGCAGCAAAGCGTCATATACAAAAGAAAGACGGTCTCGCAGTGACATCAGCAACAGCTTCTGAGAAGAAAGGACCACCACCAGAGAAAGATAGGAAGAAAGATGTGCCTCCTCCTCGTATGCAATTTGATGATAAGAACAGGCTTCCTGATCTTGAGTCCAAGTTTTTCCAACTTGATCCAGTTCATCCTGCTGTTTACAAGGTTGGATTACAATATTTAACTGGAGATATTTGTGGGGGCAATGCTCGTTGTATTGCAATGCTTCTGGCATTTCGGGAAGCCATCAAAGGCTACTCTACACCATCAGAAAAAACTCTTCCTAGAGACTTAACTGCGAAGATCAATAGCTATGTTTCATTCTTGATAGAATGCAGACCCCTTTCAATCAGCATGGGAAATGCAATTCGATTTTTAAAGGCTCGAATAGCCAATTTACCATTAACTCTTTCCGATTCAGATGCTAAAGCCTCTGTATGTTTAGACATTGACCGTTTCATTAACGAGAAAATAATACTTGCAGACAAAGTAATAGTGGGAAACACAGTGACAAAGGTAAGGGATGGGGATGTTCTTTTAACATATGGTCCATCCTCTGTTGTTGAAATGATTCTTTTACATGCTCATGAACTTGGGAAACAATTCCGTGTCGTGGTGGTTGACTCTCGTCCTAAGCTTGAAGGTCAAACACTAGTACGAAGGCTAGTGGGAAAGGGCCTGAGTTGTACATATACTCATATAAACGCTGTTTCATATATCATGCATGAAGCCACGAGAGTATTTTTGGGGGTTGAATCTGTATTATCTAATGGAACTGCATACTCGAGGGTTGGGACTGCATGTGTTGCTATGGTTGCTCATGCGTGCCATGTCCCAGTTTTGATCTGTTGTGAAGCATACAAGTTTCATGAACGGGTACTGCTGGATTCAATTTGTTCTAATGAACTTGGTGATCCAAATGCCATATCTAAAGTTCCAGGGAGGAAGGATGTTAACTATTTGGATGATTGGGCTGATAAGGAAAATCTGCAGCTTCTGAATTTAGTTTATGATGTCACTCCAGCAGAATACATCTCTATGATAATTTCAGATTATGGAATGATCCCGCCTACAAGTGTGCCTGTAATTGTGCGCGAGTATGGAAGAGACCACCTCTTTATATAA

Network for GWHGAAZE029408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01008.18	IF-2B	264	555	7.90E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03680	EIF2B4	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0044237	biological_process	cellular metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.296
	SRR3591706	second leaf	2.934
	SRR3591707	mature leaf	4.631
	SRR3591708	Shoot apex	4.011
	SRR3591709	Stem	4.949
	SRR3591710	White floral bud	3.946
	SRR3591711	White flower	6.181
	SRR3591712	Green floral bud	5.409
	SRR3591713	Yellow flower	7.899
SRP173429	SRR8316895	Juvenile bud stage	4.166
	SRR8316896	Juvenile bud stage	8.320
	SRR8316897	Juvenile bud stage	5.894
	SRR8316894	Third green stage	3.221
	SRR8316900	Third green stage	8.074
	SRR8316901	Third green stage	8.790
	SRR8316898	Complete white stage	1.860
	SRR8316899	Complete white stage	11.091
	SRR8316903	Complete white stage	3.945
	SRR8316902	Silver flowering stage	3.354
	SRR8316904	Silver flowering stage	3.643
	SRR8316905	Silver flowering stage	1.703
	SRR8316906	Gold flowering stage	8.141
	SRR8316907	Gold flowering stage	7.336
	SRR8316908	Gold flowering stage	10.080
SRP132670	SRR6706286	Control	5.018
	SRR6706287	Light intensity 50%	6.308
	SRR6706288	Light intensity 20%	6.634
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.579
	CNS0095593	Slightly white alabastrum(diploid) 2	5.452
	CNS0095594	Slightly white alabastrum(diploid) 3	4.324
	CNS0095595	Whole white alabastrum(diploid) 2	6.019
	CNS0095596	Whole white alabastrum(diploid) 3	5.226
	CNS0095597	Whole white alabastrum(diploid) 4	4.838
	CNS0095598	Silvery flower (diploied) 1	6.390
	CNS0095599	Silvery flower (diploied) 2	4.896
	CNS0095600	Silvery flower (diploied) 3	4.315
	CNS0095601	Golden flower (diploid) 1	4.726
	CNS0095602	Golden flower (diploid) 2	5.558
	CNS0095603	Golden flower (diploid) 3	5.237
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.670
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.815
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.030
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.604
	CNS0095610	Silvery flower (tetraploid) 1	10.922
	CNS0095611	Silvery flower (tetraploid) 2	8.022
	CNS0095612	Silvery flower (tetraploid) 3	4.791
	CNS0095613	Golden flower (tetraploid) 1	7.690
	CNS0095614	Golden flower (tetraploid) 2	9.472
	CNS0095615	Golden flower (tetraploid) 3	6.825
CRA001975	CRR073297	Stem 1	5.927
	CRR073298	Stem 2	4.653
	CRR073299	Stem 3	3.062
	CRR073300	Leaf 1	6.496
	CRR073301	Leaf 2	5.693
	CRR073302	Leaf 3	2.023
	CRR073303	Juvenile bud 1	3.228
	CRR073304	Juvenile bud 2	1.056
	CRR073305	Juvenile bud 3	3.054
	CRR073306	Third green 1	0.461
	CRR073307	Third green 2	0.605
	CRR073308	Third green 3	0.687
	CRR073309	Second white 1	1.016
	CRR073310	Second white 2	1.860
	CRR073311	Second white 3	1.400
	CRR073312	Silver flowering 1	2.580
	CRR073313	Silver flowering 2	2.827
	CRR073314	Silver flowering 3	3.679
	CRR073315	Gold flowering 1	1.568
	CRR073316	Gold flowering 2	3.497
	CRR073317	Gold flowering 3	1.458
	CRR073318	Tawny withering 1	3.957
	CRR073319	Tawny withering 2	4.668
	CRR073320	Tawny withering 3	4.773