Gene detail

Detail information of GWHGAAZE029410

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100319.1	0	PREDICTED: general transcription factor IIE subunit 1-like [Sesamum indicum]
trEMBL	tr\|A0A067KL60\|A0A067KL60_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP35698.1}
TAIR10	AT1G03280.1	3E-126	Transcription factor TFIIE, alpha subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	21611021	21617891	+
GWHAAZE00000009	mRNA	21611021	21617891	+
GWHAAZE00000009	exon	21611021	21611043	+
GWHAAZE00000009	exon	21611155	21611274	+
GWHAAZE00000009	exon	21611770	21611890	+
GWHAAZE00000009	exon	21613971	21614090	+
GWHAAZE00000009	exon	21614360	21614487	+
GWHAAZE00000009	exon	21614578	21614761	+
GWHAAZE00000009	exon	21615022	21615216	+
GWHAAZE00000009	exon	21615327	21615481	+
GWHAAZE00000009	exon	21615695	21615864	+
GWHAAZE00000009	exon	21617797	21617891	+
GWHAAZE00000009	CDS	21611021	21611043	+
GWHAAZE00000009	CDS	21611155	21611274	+
GWHAAZE00000009	CDS	21611770	21611890	+
GWHAAZE00000009	CDS	21613971	21614090	+
GWHAAZE00000009	CDS	21614360	21614487	+
GWHAAZE00000009	CDS	21614578	21614761	+
GWHAAZE00000009	CDS	21615022	21615216	+
GWHAAZE00000009	CDS	21615327	21615481	+
GWHAAZE00000009	CDS	21615695	21615864	+
GWHAAZE00000009	CDS	21617797	21617891	+

Transcript Sequence
>GWHTAAZE029444 ATGAGCGTCGAACCATTTAATCGGTTGGTGAAGCTTGCTGCAAGGGCTTTTTATGATGATATAACGAAAGGAGATAACCAGCCCAAAACCGGTAGGAGTGATAACAGGGGGATCGCTGTTGTGGTTCTTGATGCCCTCACAAGGCGTCAATGGGTAAGAGAAGAAGACTTGGCAAAGGACTTAAAGCTGCACTCAAAGCAACTTCGTCGAACTCTACGTTTTTTTGAAGAAGAAAAGCTAGTCACGCGGGATCACAGGAAAGAGACAGCAAAAGGTGCAAAGATTTATAGTGCTGCAGTGGCTGCCACTCAGCAGACTGGAAGAGAGGGAGAGGAAAAGATTAAGCTGCATACTCACTCTTACTGTTGTCTAGACTATGCACAGAAAAAGGAGCTGCTGCAGATATACGATGTTGTGAGGTATAGAATGCACCGCATGAAGAAGAAGCTAAAAGACGAACTGGATAACAAGAACACAGTTCAGGAGTATATATGCCCTAACTGCTCGAGAAGATATACTGCTTTGGATGCGTTGCGACTGATTTCTCCAGTAGATGAATATTTTCATTGCGAAAATTGCAATGGGGAGCTAGTGGCAGAAAGTGACAAGTTAGCCGCCCAAGAAATGGGAGATGGAGATGACAATGCAAGGAGGCGCCACCGTGAAAAATTGAAGGATATGCTTCAAAATATGGAGGTACAGCTAAAGCCCCTAATGGAGCAACTCAGCAGAGTAAAAGATTTGGCTGTTCCTGAATTTGGAACTCTTCAAGCATGGGAAGTTCGAGCAAATGCTGCTGCACGTGCAAATGGTGATTCTAATTCCAATGATCCCAATAAATCTTCACAGGGTTATGGTGGAACTCGTATGCCATTTGTTGGAGAGACAAAGGTTGAAGTTGCGTTCTCCGGTACTGAAGAAAAAGGAGATATCAAATCCGAGAGTGCAAATGAACCTATGAAAGTTTTGCCTCCATGGATGATCAAGCAAGGAATGAACCTTACAAAAGAACAACGGGGAGGTCAAACAAGAGTCAAAGATGGAGGGCAGCAAGAGCAAGAGGCTGCTTCCACGAAGGAACAGGAGTTGCCAAATACTAGCATTTCGGATACTGTAAATGGCACATCTTCGGACCGTCAAGTTGGCATGAAGTCAAAACGTGCTGATGATGATGAGGTTGATGATGATGTTGATTGGGAGGAAGCTCCACCAGCAGGAAATACTAGTGAAACTTTTAAGGTGAGCGACCTGAATGCTCAAGCAGATGCTTCAGGTGATGACGAAGATGACATCGACTGGGAAGAGGGTTGA

Network for GWHGAAZE029410

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02002.18	TFIIE_alpha	39	95	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03136	TFIIE1, GTF2E1, TFA1, tfe	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.791
	SRR3591706	second leaf	17.905
	SRR3591707	mature leaf	14.607
	SRR3591708	Shoot apex	34.706
	SRR3591709	Stem	27.141
	SRR3591710	White floral bud	14.115
	SRR3591711	White flower	14.400
	SRR3591712	Green floral bud	13.336
	SRR3591713	Yellow flower	12.713
SRP173429	SRR8316895	Juvenile bud stage	10.890
	SRR8316896	Juvenile bud stage	17.512
	SRR8316897	Juvenile bud stage	7.578
	SRR8316894	Third green stage	6.953
	SRR8316900	Third green stage	18.529
	SRR8316901	Third green stage	17.244
	SRR8316898	Complete white stage	7.811
	SRR8316899	Complete white stage	26.463
	SRR8316903	Complete white stage	14.463
	SRR8316902	Silver flowering stage	7.876
	SRR8316904	Silver flowering stage	11.127
	SRR8316905	Silver flowering stage	5.136
	SRR8316906	Gold flowering stage	16.095
	SRR8316907	Gold flowering stage	13.472
	SRR8316908	Gold flowering stage	12.787
SRP132670	SRR6706286	Control	20.090
	SRR6706287	Light intensity 50%	22.075
	SRR6706288	Light intensity 20%	21.537
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.982
	CNS0095593	Slightly white alabastrum(diploid) 2	13.274
	CNS0095594	Slightly white alabastrum(diploid) 3	12.100
	CNS0095595	Whole white alabastrum(diploid) 2	12.739
	CNS0095596	Whole white alabastrum(diploid) 3	13.186
	CNS0095597	Whole white alabastrum(diploid) 4	16.494
	CNS0095598	Silvery flower (diploied) 1	15.566
	CNS0095599	Silvery flower (diploied) 2	11.827
	CNS0095600	Silvery flower (diploied) 3	14.682
	CNS0095601	Golden flower (diploid) 1	14.136
	CNS0095602	Golden flower (diploid) 2	15.415
	CNS0095603	Golden flower (diploid) 3	14.043
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.796
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.329
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.050
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.558
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.518
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.644
	CNS0095610	Silvery flower (tetraploid) 1	17.346
	CNS0095611	Silvery flower (tetraploid) 2	18.039
	CNS0095612	Silvery flower (tetraploid) 3	16.896
	CNS0095613	Golden flower (tetraploid) 1	9.531
	CNS0095614	Golden flower (tetraploid) 2	16.776
	CNS0095615	Golden flower (tetraploid) 3	13.212
CRA001975	CRR073297	Stem 1	23.234
	CRR073298	Stem 2	22.398
	CRR073299	Stem 3	13.898
	CRR073300	Leaf 1	24.107
	CRR073301	Leaf 2	22.302
	CRR073302	Leaf 3	15.899
	CRR073303	Juvenile bud 1	14.630
	CRR073304	Juvenile bud 2	11.380
	CRR073305	Juvenile bud 3	15.539
	CRR073306	Third green 1	6.012
	CRR073307	Third green 2	6.109
	CRR073308	Third green 3	5.165
	CRR073309	Second white 1	3.105
	CRR073310	Second white 2	5.170
	CRR073311	Second white 3	6.056
	CRR073312	Silver flowering 1	4.447
	CRR073313	Silver flowering 2	3.021
	CRR073314	Silver flowering 3	4.979
	CRR073315	Gold flowering 1	4.573
	CRR073316	Gold flowering 2	10.499
	CRR073317	Gold flowering 3	3.634
	CRR073318	Tawny withering 1	16.309
	CRR073319	Tawny withering 2	11.392
	CRR073320	Tawny withering 3	13.012