Gene detail

Detail information of GWHGAAZE029426

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009630144.1	PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like isoform X1 [Nicotiana tomentosiformis]
COG	YP_001840784.1	membrane-bound proton-translocating pyrophosphatase
Swissprot	tr\|P21616\|AVP_VIGRR	Pyrophosphate-energized vacuolar membrane proton pump
trEMBL	tr\|M0ZSL2\|M0ZSL2_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400007173}
TAIR10	AT1G15690.1	Inorganic H pyrophosphatase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	22081344	22101143	-
GWHAAZE00000009	mRNA	22081344	22101143	-
GWHAAZE00000009	exon	22100909	22101143	-
GWHAAZE00000009	exon	22099581	22099665	-
GWHAAZE00000009	exon	22098375	22098948	-
GWHAAZE00000009	exon	22086211	22086590	-
GWHAAZE00000009	exon	22086043	22086129	-
GWHAAZE00000009	exon	22084466	22084796	-
GWHAAZE00000009	exon	22083526	22083934	-
GWHAAZE00000009	exon	22083040	22083044	-
GWHAAZE00000009	exon	22082325	22082384	-
GWHAAZE00000009	exon	22081344	22081550	-
GWHAAZE00000009	CDS	22100909	22101143	-
GWHAAZE00000009	CDS	22099581	22099665	-
GWHAAZE00000009	CDS	22098375	22098948	-
GWHAAZE00000009	CDS	22086211	22086590	-
GWHAAZE00000009	CDS	22086043	22086129	-
GWHAAZE00000009	CDS	22084466	22084796	-
GWHAAZE00000009	CDS	22083526	22083934	-
GWHAAZE00000009	CDS	22083040	22083044	-
GWHAAZE00000009	CDS	22082325	22082384	-
GWHAAZE00000009	CDS	22081344	22081550	-

Transcript Sequence
>GWHTAAZE029460 ATGGGTTTGATGAGTGAGTCACTAACACAAGTTTTGATTCCCGTGGCTGCCTTGATTGGGATTGGGTTTGCTTTGGTTCAGTGGTTCTTGGTGGCAAAGGTGAAGGTTTCAAGTGAGATTGAAGGGCAAAATGGGTATAAAGACAGGTTAATAGAAGAAGATGAACAAGAAGAGGGTATTGATAGTGATGAAGCTGTTGCCAAGTGTGCTGAGATTCAAAATGCCATTTCTGTTGCATGTAATGGCATTCCCAATTTCGGTAGTTGTGTTGGGTGCTTGTTTTGTTTTCTTAATGTAATGTCTGAATATGAAGTTCAAAAGGCAACATCATTTCTATTCACTCAATACAAGTACCTTGGGATTTTCACATTGGCATTCGGCCTCATCATTTTCCTCTTTCTCGGATCGGTTAAGAGCTTTAGCACCAAAAGCGAACCGTGCACTTACAACAAGGGGAACCTATGTAAACCGGCCTTAGCCAATGCCCTCTTTAGCACACTTGCCTTTTTTCTAGGCTCACTCACGTCGGTCCTTTCGGGTTTTCTTGGAATGAAGATAGCAACATTTGCTAATGCAAGAACTACCCTTGAGGCAAGGAAAGGTGTTGGAAAAGCTTTTATAACGGCTTTTAGGTCCGGTGCGGTAATGGGATTCCTTCTTGCTGCAAATGGGCTTTTGGTTCTTTATGTTACTATTAATTTGTTTAAGTTGTATTATGGGGACGACTGGGAGGGACTTTATGAGTCGATCACTGGTTATGGTCTTGGCGGTTCCTCGATGGCGTTATTTGGAAGAGTTGGGGGAGGAATATACACGAAAGCGGCCGATGTTGGTGCTGATCTAGTCGGGAAAGTTGAACGAAATATTCCTGAAGACGATCCACGTAACCCAGCTGTTATAGCAGATAATGTGGGTGACAATGTAGGAGACATAGCCGGGATGGGATCGGACTTATTTGGCTCTTACGCCGAATCAACATGTGCCGCTCTCTTTGTTGCATCGATATCTTCATTTGGTACAAGCCATGACTACACAGCCATGTCTTATCCACTTATTATAAGCTCGATGGGCATAGTAATTTGTTTGATTACAACACTCTTTGCTACCGACTTCTTTGAGATCAAGAATGTGACCGATATCGAACCGTCCTTAAAGCGACAGCTACTTATTTCGACGGTCCTGATGACTGCTGGGATCGCCATGGTCACCTTCATTGCTTTGCCATCCAAGTTCACTATCTTTAACTTTGGGGAAGATAAGGTCGTTAAAAACTGGCACCTTTTCTTTTGTGTTGCCATTGGCTTGTGGGCTGGTCTTGTTATCGGATATACTACCGAGTATTACACTAGCAATGTCTACAGCCCAGTGCAGGATGTGGCGGATTCTTGCAGGACCGGTGCTGCAACGAATGTGATATTTGGGTTGGCTCTTGGCTACAAATCAGTCATAATTCCCATATTTTCCATAGCGATTGCTATTTACGTGAGCTTTAGCTTGGCTGCTATGTACGGAATTGCAGTAGCTGCTTTGGGAATGCTCAGCACTATAGCCACCGGCCTTGCAATTGATGCGTATGGACCCATAAGTGACAATGCTGGTGGTATTGCAGAAATGGCCGGAATGAGTCACACTATTCGTGAAAGAACCGATGCGCTTGATGCTGCTGGAAACACTACTGCTGCAATCGGCAAGGGATTTGCAATTGGATCAGCCGCTCTGGTTTCTCTTGCATTATTTGGTGCCTTTGTGAGCAGAGCTGGAATCAAGACCGTCGACGTATTAACCCCAAAAGTTTTCATTGGTTTGATTGTGGGGGCAATGCTTCCTTACTGGTTCTCGGCCATGACAATGAAGAGTGTAGGAAGTGCAGCTCTAAAAATGGTAGAAGAGGTTCGACGCCAGTTCAATACTATTCCGGGGCTTATGGAAGGGACTACGAAACCCGACTATGCAACTTGTGTTAAAATTTCCACAGATGCGTCACTAAAAGAAATGATCCCACCAGGTGCTTTGGTAATTCTCTCGCCGTTGATTGCCGGTACATTCTTCGGTGTAGAAACACTTGCCGGTGTTCTTGCTGGATCACTTGTTTCCGGTGCAGGTGGGGTTGCCATTTCGGCTTCAAACACCGGTGGAGCATGGGATAATGCCAAGAAGTACATTGAGGCTGGTGCATCGGAACACGCACGATCACTGGGGCCCAAGGGATCGGACGCTCATAAGGCCGCCGTGATAGGTGACACTGTCGGAGATCCCCTCAAAGACACATCTGGACCGTCGCTTAACATCCTCATTAAGCTGATGGCAGTCGAATCTTTGGTCTTTGCCCCGTTCTTTGCAGCTCATGGCGGATTGCTCTTCAAATGGCTTTAA

Network for GWHGAAZE029426

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0098

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03030.17	H_PPase	106	775	5.40E-248

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0016020	cellular_component	membrane
GO:0004427	molecular_function	inorganic diphosphatase activity
GO:0009678	molecular_function	pyrophosphate hydrolysis-driven proton transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.099
	SRR3591706	second leaf	0.029
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.068
	SRR3591709	Stem	0.733
	SRR3591710	White floral bud	2.665
	SRR3591711	White flower	2.824
	SRR3591712	Green floral bud	2.031
	SRR3591713	Yellow flower	4.196
SRP173429	SRR8316895	Juvenile bud stage	13.949
	SRR8316896	Juvenile bud stage	17.971
	SRR8316897	Juvenile bud stage	3.715
	SRR8316894	Third green stage	4.425
	SRR8316900	Third green stage	8.826
	SRR8316901	Third green stage	10.311
	SRR8316898	Complete white stage	0.980
	SRR8316899	Complete white stage	5.814
	SRR8316903	Complete white stage	1.132
	SRR8316902	Silver flowering stage	0.184
	SRR8316904	Silver flowering stage	0.373
	SRR8316905	Silver flowering stage	0.193
	SRR8316906	Gold flowering stage	1.369
	SRR8316907	Gold flowering stage	1.426
	SRR8316908	Gold flowering stage	2.593
SRP132670	SRR6706286	Control	6.806
	SRR6706287	Light intensity 50%	8.945
	SRR6706288	Light intensity 20%	8.963
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.766
	CNS0095593	Slightly white alabastrum(diploid) 2	9.574
	CNS0095594	Slightly white alabastrum(diploid) 3	12.540
	CNS0095595	Whole white alabastrum(diploid) 2	10.688
	CNS0095596	Whole white alabastrum(diploid) 3	14.414
	CNS0095597	Whole white alabastrum(diploid) 4	9.832
	CNS0095598	Silvery flower (diploied) 1	2.387
	CNS0095599	Silvery flower (diploied) 2	3.307
	CNS0095600	Silvery flower (diploied) 3	1.436
	CNS0095601	Golden flower (diploid) 1	2.938
	CNS0095602	Golden flower (diploid) 2	2.922
	CNS0095603	Golden flower (diploid) 3	2.437
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.880
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.351
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.118
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.381
	CNS0095610	Silvery flower (tetraploid) 1	1.263
	CNS0095611	Silvery flower (tetraploid) 2	0.775
	CNS0095612	Silvery flower (tetraploid) 3	2.588
	CNS0095613	Golden flower (tetraploid) 1	2.715
	CNS0095614	Golden flower (tetraploid) 2	2.208
	CNS0095615	Golden flower (tetraploid) 3	3.677
CRA001975	CRR073297	Stem 1	26.704
	CRR073298	Stem 2	21.551
	CRR073299	Stem 3	42.827
	CRR073300	Leaf 1	14.071
	CRR073301	Leaf 2	13.688
	CRR073302	Leaf 3	11.872
	CRR073303	Juvenile bud 1	9.646
	CRR073304	Juvenile bud 2	7.881
	CRR073305	Juvenile bud 3	7.318
	CRR073306	Third green 1	1.543
	CRR073307	Third green 2	2.262
	CRR073308	Third green 3	1.398
	CRR073309	Second white 1	0.609
	CRR073310	Second white 2	0.561
	CRR073311	Second white 3	1.002
	CRR073312	Silver flowering 1	3.440
	CRR073313	Silver flowering 2	2.811
	CRR073314	Silver flowering 3	3.646
	CRR073315	Gold flowering 1	2.220
	CRR073316	Gold flowering 2	1.559
	CRR073317	Gold flowering 3	1.524
	CRR073318	Tawny withering 1	3.229
	CRR073319	Tawny withering 2	2.658
	CRR073320	Tawny withering 3	2.654