Gene detail

Detail information of GWHGAAZE029445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006480358.1	0	PREDICTED: cysteine desulfurase 2, chloroplastic-like [Citrus sinensis]
COG	YP_007101293.1	2E-49	Isopenicillin-N epimerase
Swissprot	tr\|Q9LGZ2\|LCYD1_ORYSJ	2E-180	Putative L-cysteine desulfhydrase 1
trEMBL	tr\|A0A067DKN9\|A0A067DKN9_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO43438.1}
TAIR10	AT5G26600.2	2E-159	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	23083178	23091658	+
GWHAAZE00000009	mRNA	23083178	23091658	+
GWHAAZE00000009	exon	23091606	23091658	+
GWHAAZE00000009	exon	23083178	23084246	+
GWHAAZE00000009	CDS	23083178	23084242	+
GWHAAZE00000009	three_prime_UTR	23084243	23084246	+
GWHAAZE00000009	three_prime_UTR	23091606	23091658	+

Transcript Sequence
>GWHTAAZE029479 ATTAAGGACCTGATCCACGCGGACCACGTCGACGAGGTCTCGATCGTCGACAACGCCACCACCGCCTCCGCCATCGTCCTCCAGCACATCTCCTGGTCGTTCTTCGAGAACAAATTCGAGAAAGGAGATACCGTGGTGATGCTCCACTACGCTTACGGAGCGGTGAAGAAGTCGGTGGAGGCTTACGTCACTCGCGCGGGAGGTGAGGTCATCGAGGTGAAATTGCCTTTTCCTTTGAATTCTAATGATGAGATTATTTCGGAGTTTAGGAAAGCCCTAGAGAAGGGGAAAATGAATGGTAGGAAAGTTAGGTTAGCTGTTATTGATCATATAACCTCGATGCCTAGTGTACTGATTCCGGTTAAGGAATTGGTTAAGATGTGCAGAGAAGAAGGTGTTGATCGAATTTTCGTTGATGCTGCACATGCAATTGGATGTACTGAGATTAATGTGAAGGAAATTGGTGCTGATTTTTACACTAGTAATTTGCATAAGTGGTTTTTTTGTCCACCTGCTGTTGCGTTTTTGTATTGTAGAAAATCGGAGGAAGTACCCGATTTGCATCATCCGGTTGTATCGCATGAGTACGGTAATGGATTAGCAATAGAGAGTGCGTGGATCGGGACTAGGGATTATAGTGCTCAGCTTGTGGTTCCGGAAGTGTTGGAGTTTGTGAATAGATTCGAAGGTGGGATTGATGGGATAAGAAAGAGGAACCATGAGAAGGTTGTGGAAATGGGGGAAATGTTGGCGAAAGAGTGGGGAACGAAGCTCGGGTCACCACCGGAGATGTGTTCTAGTATGGCTATGGTTGGATTACCGGCTTGTTTAGGGATTTCGAGTGAATCAGATGCTCTGGATTTGAGGACTCATTTGAGGGATTGTTTTGGGGTTGAAGTACCGATATATTATCGGGCACCAGAAGAAGGGGAGGTTAATCCAATCACAGGGTACGCTAGAATTTCTCATCAAGTTTACAATACGGTTGATGATTATTACAAGTTCAGGGATGCGGTCAATAAACTTGTTTCTGATGGATTTACTTGCAAGCTTCTCTTGAATTGAAAAGTTCTTTGGCGTGTTCTATGGAATCATCTGATGAATAACAGCCAAGATTTCAGT

Network for GWHGAAZE029445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00266.20	Aminotran_5	1	265	4.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22207	LCD	Metabolic pathways	map01100
K22207	LCD	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.669
	SRR3591706	second leaf	1.633
	SRR3591707	mature leaf	1.295
	SRR3591708	Shoot apex	2.268
	SRR3591709	Stem	2.375
	SRR3591710	White floral bud	4.623
	SRR3591711	White flower	4.415
	SRR3591712	Green floral bud	3.741
	SRR3591713	Yellow flower	3.496
SRP173429	SRR8316895	Juvenile bud stage	8.595
	SRR8316896	Juvenile bud stage	14.369
	SRR8316897	Juvenile bud stage	10.797
	SRR8316894	Third green stage	5.290
	SRR8316900	Third green stage	18.707
	SRR8316901	Third green stage	15.408
	SRR8316898	Complete white stage	7.401
	SRR8316899	Complete white stage	15.131
	SRR8316903	Complete white stage	13.793
	SRR8316902	Silver flowering stage	8.059
	SRR8316904	Silver flowering stage	13.338
	SRR8316905	Silver flowering stage	5.962
	SRR8316906	Gold flowering stage	17.925
	SRR8316907	Gold flowering stage	12.819
	SRR8316908	Gold flowering stage	21.145
SRP132670	SRR6706286	Control	11.514
	SRR6706287	Light intensity 50%	12.213
	SRR6706288	Light intensity 20%	11.504
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.501
	CNS0095593	Slightly white alabastrum(diploid) 2	10.326
	CNS0095594	Slightly white alabastrum(diploid) 3	8.012
	CNS0095595	Whole white alabastrum(diploid) 2	7.784
	CNS0095596	Whole white alabastrum(diploid) 3	8.652
	CNS0095597	Whole white alabastrum(diploid) 4	6.944
	CNS0095598	Silvery flower (diploied) 1	10.293
	CNS0095599	Silvery flower (diploied) 2	8.207
	CNS0095600	Silvery flower (diploied) 3	18.798
	CNS0095601	Golden flower (diploid) 1	9.825
	CNS0095602	Golden flower (diploid) 2	18.595
	CNS0095603	Golden flower (diploid) 3	16.340
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.607
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.422
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.942
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.988
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.566
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.468
	CNS0095610	Silvery flower (tetraploid) 1	22.905
	CNS0095611	Silvery flower (tetraploid) 2	23.510
	CNS0095612	Silvery flower (tetraploid) 3	21.435
	CNS0095613	Golden flower (tetraploid) 1	12.313
	CNS0095614	Golden flower (tetraploid) 2	16.599
	CNS0095615	Golden flower (tetraploid) 3	15.271
CRA001975	CRR073297	Stem 1	19.937
	CRR073298	Stem 2	18.442
	CRR073299	Stem 3	19.431
	CRR073300	Leaf 1	13.884
	CRR073301	Leaf 2	15.291
	CRR073302	Leaf 3	16.990
	CRR073303	Juvenile bud 1	17.434
	CRR073304	Juvenile bud 2	10.728
	CRR073305	Juvenile bud 3	13.772
	CRR073306	Third green 1	13.310
	CRR073307	Third green 2	8.481
	CRR073308	Third green 3	11.054
	CRR073309	Second white 1	25.102
	CRR073310	Second white 2	21.487
	CRR073311	Second white 3	21.676
	CRR073312	Silver flowering 1	19.618
	CRR073313	Silver flowering 2	24.626
	CRR073314	Silver flowering 3	20.165
	CRR073315	Gold flowering 1	3.405
	CRR073316	Gold flowering 2	5.060
	CRR073317	Gold flowering 3	4.610
	CRR073318	Tawny withering 1	15.355
	CRR073319	Tawny withering 2	9.665
	CRR073320	Tawny withering 3	14.678