Detail information of GWHGAAZE029456


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281533.10PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Vitis vinifera]
COGYP_007114676.14E-30(Myosin heavy-chain) kinase
Swissprottr|Q8W117|SMU1_ARATH0Suppressor of mec-8 and unc-52 protein homolog 1
trEMBLtr|D7SHM1|D7SHM1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI14981.3}
TAIR10AT1G73720.15E-141transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2329723523303457-
GWHAAZE00000009mRNA2329723523303457-
GWHAAZE00000009exon2330345523303457-
GWHAAZE00000009exon2330273723302889-
GWHAAZE00000009exon2330172423301772-
GWHAAZE00000009exon2330138623301469-
GWHAAZE00000009exon2330092023300992-
GWHAAZE00000009exon2329971023299794-
GWHAAZE00000009exon2329957023299623-
GWHAAZE00000009exon2329903423299129-
GWHAAZE00000009exon2329829023298417-
GWHAAZE00000009exon2329801023298136-
GWHAAZE00000009exon2329786823297927-
GWHAAZE00000009exon2329745123297550-
GWHAAZE00000009exon2329723523297281-
GWHAAZE00000009CDS2330345523303457-
GWHAAZE00000009CDS2330273723302889-
GWHAAZE00000009CDS2330172423301772-
GWHAAZE00000009CDS2330138623301469-
GWHAAZE00000009CDS2330092023300992-
GWHAAZE00000009CDS2329971023299794-
GWHAAZE00000009CDS2329957023299623-
GWHAAZE00000009CDS2329903423299129-
GWHAAZE00000009CDS2329829023298417-
GWHAAZE00000009CDS2329801023298136-
GWHAAZE00000009CDS2329786823297927-
GWHAAZE00000009CDS2329745123297550-
GWHAAZE00000009CDS2329723523297281-
Transcript Sequence

Network for GWHGAAZE029456

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401281525.30E-05
PF00400.33WD401732012.40E-06
PF00400.33WD402062430.0081
PF00400.33WD402492871.10E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.042
SRR3591706second leaf2.260
SRR3591707mature leaf4.004
SRR3591708Shoot apex3.497
SRR3591709Stem4.820
SRR3591710White floral bud0.227
SRR3591711White flower0.322
SRR3591712Green floral bud0.051
SRR3591713Yellow flower0.177
SRP173429 SRR8316895Juvenile bud stage 3.219
SRR8316896Juvenile bud stage 3.251
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 1.508
SRR8316900Third green stage 3.035
SRR8316901Third green stage 2.562
SRR8316898Complete white stage 1.642
SRR8316899Complete white stage 6.056
SRR8316903Complete white stage 2.364
SRR8316902Silver flowering stage3.814
SRR8316904Silver flowering stage4.083
SRR8316905Silver flowering stage1.909
SRR8316906Gold flowering stage 3.082
SRR8316907Gold flowering stage 4.302
SRR8316908Gold flowering stage 1.424
SRP132670SRR6706286Control1.223
SRR6706287Light intensity 50%1.322
SRR6706288Light intensity 20%1.679
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.203
CNS0095593Slightly white alabastrum(diploid) 22.888
CNS0095594Slightly white alabastrum(diploid) 32.083
CNS0095595Whole white alabastrum(diploid) 22.656
CNS0095596Whole white alabastrum(diploid) 31.758
CNS0095597Whole white alabastrum(diploid) 41.804
CNS0095598Silvery flower (diploied) 15.428
CNS0095599Silvery flower (diploied) 23.551
CNS0095600Silvery flower (diploied) 31.880
CNS0095601Golden flower (diploid) 15.543
CNS0095602Golden flower (diploid) 22.395
CNS0095603Golden flower (diploid) 32.096
CNS0095604Slightly white alabastrum(tetraploid) 14.455
CNS0095605Slightly white alabastrum(tetraploid) 22.706
CNS0095606Slightly white alabastrum(tetraploid) 34.118
CNS0095607Whole white alabastrum(tetraploid) 12.162
CNS0095608Whole white alabastrum(tetraploid) 21.263
CNS0095609Whole white alabastrum(tetraploid) 32.318
CNS0095610Silvery flower (tetraploid) 14.369
CNS0095611Silvery flower (tetraploid) 22.774
CNS0095612Silvery flower (tetraploid) 36.807
CNS0095613Golden flower (tetraploid) 13.544
CNS0095614Golden flower (tetraploid) 24.281
CNS0095615Golden flower (tetraploid) 32.019
CRA001975CRR073297Stem 12.978
CRR073298Stem 22.403
CRR073299Stem 31.469
CRR073300Leaf 11.484
CRR073301Leaf 21.748
CRR073302Leaf 31.468
CRR073303Juvenile bud 10.392
CRR073304Juvenile bud 21.205
CRR073305Juvenile bud 30.709
CRR073306Third green 10.597
CRR073307Third green 21.427
CRR073308Third green 31.379
CRR073309Second white 10.938
CRR073310Second white 21.804
CRR073311Second white 31.213
CRR073312Silver flowering 10.159
CRR073313Silver flowering 20.277
CRR073314Silver flowering 30.195
CRR073315Gold flowering 10.229
CRR073316Gold flowering 20.545
CRR073317Gold flowering 30.422
CRR073318Tawny withering 12.118
CRR073319Tawny withering 21.837
CRR073320Tawny withering 31.599