Gene detail

Detail information of GWHGAAZE029458

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006587443.1	5.3764E-129	PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like isoform X5 [Glycine max]
Swissprot	tr\|Q9LD37\|CNG20_ARATH	2E-60	Probable cyclic nucleotide-gated ion channel 20, chloroplastic (Precursor)
trEMBL	tr\|K7LED6\|K7LED6_SOYBN	2E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G29860.2}
TAIR10	AT3G17700.1	5E-45	cyclic nucleotide-binding transporter 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	23328980	23345782	+
GWHAAZE00000009	mRNA	23328980	23345782	+
GWHAAZE00000009	exon	23328980	23329486	+
GWHAAZE00000009	exon	23334413	23334550	+
GWHAAZE00000009	exon	23334737	23334985	+
GWHAAZE00000009	exon	23341197	23341222	+
GWHAAZE00000009	exon	23344659	23344721	+
GWHAAZE00000009	exon	23345683	23345782	+
GWHAAZE00000009	CDS	23328980	23329486	+
GWHAAZE00000009	CDS	23334413	23334550	+
GWHAAZE00000009	CDS	23334737	23334985	+
GWHAAZE00000009	CDS	23341197	23341222	+
GWHAAZE00000009	CDS	23344659	23344721	+
GWHAAZE00000009	CDS	23345683	23345782	+

Transcript Sequence
>GWHTAAZE029492 ATGGATTCGCTTGAGAAAGATGAGGTACCAATGCTATCAGCCACATATTCGCACAAGGATGCACAAGCGGATCCTCAATTCCGGAGGTTTCAATACAGGACGCAGAGTGCATCAATATCGTCCATTCCTACGAACTCTATAGAGTTTAACGAAAATGAAAATAGTTTTGTAGGTCATACTGGTCCTTTGCGTAGTGACAAAAAAACTCCATTCATACAGATGAGTGGTCCTTTATACGTTAACCGTAAACATGATAACCTTTTTCGGCCTGCCCAAACTGCAATAGGGCGCAAAGCAACTGAGTCTACAGTCGAAAAATATCCTTCATTTAATGGAATGGATCAGAATGATTGGCCTAATAATAACTACGTGGGCAAAAACGAACATTTATTGAAGTCTGGGCAACTGGGAATGTGCAATGATCCTTACTGCCTGACATGCCCAATTTATTACAATTTTAAGGGGCAGCAAAAGAACTCAAAATCATCAGTTATGTTTGACCAGAAGTTTAGATTGGCTTATGTTGCTCCTGAGTCTAGAGTGGTGGGTGCTGGAGACTTAGTTGACCATCCAAAAAAAATTGCTCTCAATTGTCTTTCTGGATACTTTCTTATTGACTTCTTTGTTGTATTACCACTTCCTCAAATCATTATATTACTGGTCCTACCAAAGGTCCTGGGTTCATCTGGGGCAAATTATGCGAAGAATCTTTTGCGAGCATTAGTTCTTGTTCAGTACATTCCCAGGTTGTATAGGTTTTTGCCTTTGGTTGCTGGTCAGTCTCCAAGTGGCTTCATATTTGAGTCTGCATGGGCGAAATTTGTCATAAATCTTTTCACTTTTGTGTTGTCTGGTCATGTTGTGGGGTCATGCTGGTATCTCTTTGGGTTACAGAACTTTCTCCAGGCTCTTGGACGCAGAACAACTAACGGCCGGCCACCGCCAACTCCTCCCAGTGGTGGTCTGGTGTGGGCCGTGGGAAGAATATCTCTGCCGTGGTTTTTGGCCACCGTTTTCAACTGGCTCAGTGCAACTGAGCAAGCCTTGCCAGAGCATATTCTTAAAAGTTGCAATTATGCGTGA

Network for GWHGAAZE029458

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	186	301	1.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.075
	SRR3591706	second leaf	0.112
	SRR3591707	mature leaf	0.490
	SRR3591708	Shoot apex	0.116
	SRR3591709	Stem	0.100
	SRR3591710	White floral bud	0.026
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.110
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.138
	SRR8316896	Juvenile bud stage	0.184
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.015
	SRR8316900	Third green stage	0.229
	SRR8316901	Third green stage	0.221
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.267
	SRR8316903	Complete white stage	0.030
	SRR8316902	Silver flowering stage	0.097
	SRR8316904	Silver flowering stage	0.076
	SRR8316905	Silver flowering stage	0.215
	SRR8316906	Gold flowering stage	0.567
	SRR8316907	Gold flowering stage	0.306
	SRR8316908	Gold flowering stage	0.130
SRP132670	SRR6706286	Control	1.097
	SRR6706287	Light intensity 50%	0.570
	SRR6706288	Light intensity 20%	0.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.762
	CNS0095593	Slightly white alabastrum(diploid) 2	0.963
	CNS0095594	Slightly white alabastrum(diploid) 3	0.301
	CNS0095595	Whole white alabastrum(diploid) 2	0.431
	CNS0095596	Whole white alabastrum(diploid) 3	0.720
	CNS0095597	Whole white alabastrum(diploid) 4	0.902
	CNS0095598	Silvery flower (diploied) 1	0.134
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.170
	CNS0095601	Golden flower (diploid) 1	0.446
	CNS0095602	Golden flower (diploid) 2	0.592
	CNS0095603	Golden flower (diploid) 3	0.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.525
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.756
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.816
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.635
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.186
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.284
	CNS0095610	Silvery flower (tetraploid) 1	0.121
	CNS0095611	Silvery flower (tetraploid) 2	0.220
	CNS0095612	Silvery flower (tetraploid) 3	0.056
	CNS0095613	Golden flower (tetraploid) 1	0.218
	CNS0095614	Golden flower (tetraploid) 2	0.283
	CNS0095615	Golden flower (tetraploid) 3	0.049
CRA001975	CRR073297	Stem 1	0.325
	CRR073298	Stem 2	0.242
	CRR073299	Stem 3	0.034
	CRR073300	Leaf 1	0.116
	CRR073301	Leaf 2	0.221
	CRR073302	Leaf 3	0.053
	CRR073303	Juvenile bud 1	0.171
	CRR073304	Juvenile bud 2	0.152
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.038
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.563
	CRR073316	Gold flowering 2	0.338
	CRR073317	Gold flowering 3	0.071
	CRR073318	Tawny withering 1	0.879
	CRR073319	Tawny withering 2	0.640
	CRR073320	Tawny withering 3	0.266