Gene detail

Detail information of GWHGAAZE029463

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFX67029.1	1.61078E-71	aspartic protease, partial [Solanum tuberosum]
Swissprot	tr\|P42211\|ASPRX_ORYSJ	4E-63	Aspartic proteinase (Precursor)
trEMBL	tr\|K7X8F9\|K7X8F9_SOLTU	6E-72	Aspartic protease {ECO:0000313\|EMBL:AFX67029.1} (Fragment)
TAIR10	AT1G11910.1	5E-53	aspartic proteinase A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	23496679	23500188	+
GWHAAZE00000009	mRNA	23496679	23500188	+
GWHAAZE00000009	exon	23496679	23496793	+
GWHAAZE00000009	exon	23497902	23497993	+
GWHAAZE00000009	exon	23498092	23498137	+
GWHAAZE00000009	exon	23498334	23498398	+
GWHAAZE00000009	exon	23498531	23498644	+
GWHAAZE00000009	exon	23498751	23498815	+
GWHAAZE00000009	exon	23499216	23499289	+
GWHAAZE00000009	exon	23499921	23499987	+
GWHAAZE00000009	exon	23500104	23500188	+
GWHAAZE00000009	CDS	23496679	23496793	+
GWHAAZE00000009	CDS	23497902	23497993	+
GWHAAZE00000009	CDS	23498092	23498137	+
GWHAAZE00000009	CDS	23498334	23498398	+
GWHAAZE00000009	CDS	23498531	23498644	+
GWHAAZE00000009	CDS	23498751	23498815	+
GWHAAZE00000009	CDS	23499216	23499289	+
GWHAAZE00000009	CDS	23499921	23499987	+
GWHAAZE00000009	CDS	23500104	23500188	+

Transcript Sequence
>GWHTAAZE029497 GATATAAATGAGTCAATTGATGATATAGTATTTGATGAAGAACCTGTAGAATCCAATGCAAATGCTAATATGATTGCAATGGTTCAAGAGGGAAAGGGGATTCCACGGTTTGAAAATGGGGGTGAGCTTGTTTTTGGCGGTGTTGATCCAAAACACTTCAAGGGGAAACATACTTATGTTCCCGTCACTCAAAGGGGCTACTGGCAGTTTGAAATGGGAGATTTTCTCATTGGCAACCAATCAACAGTTAGTTGTTTTTGTGAGGGGGGATGTGCTGCAATTATGGATTCTGGAACATCATTGCTTGCTGGTCCAACCACAATTGTGACTGAAATCAACCATGCAATTGGAGCCAAAGGAGTAGTGAGCATGGAATGTAAACAAGTCGTTTCTCAATACGGAGAGATAATATTGGATCTTTTGGTATCCGGGGTAACATCCGACAAAGTATGTTCAGTGGTTGGTTTATGTTTCTTCAATGGAACTCAGTCTGTGAGTTCAAACATCAATACAGTAGTTGAAGAGGAGGAAGTTGGGGAAAGTATTATGTGCAGTGGTTGCAAAATGACTGGCCGTGCTAAAGTCTGTCTGAATGCCTTCATTTCGTTGGATGTGCCGCCTCCTCACTGTCCTATGTGGATTCTTGGAGATGTATTCATGCGTGCATATCATACTGTGTTTGACTACGGTAATCTACGACTGGGTTTTGCTAAAGCTGCGTAA

Network for GWHGAAZE029463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0154

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00026.24	Asp	38	239	3.20E-43
PF03489.18	SapB_2	125	157	4.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.235
	SRR3591706	second leaf	0.031
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.213
	SRR3591709	Stem	0.167
	SRR3591710	White floral bud	0.162
	SRR3591711	White flower	0.065
	SRR3591712	Green floral bud	0.065
	SRR3591713	Yellow flower	0.280
SRP173429	SRR8316895	Juvenile bud stage	14.451
	SRR8316896	Juvenile bud stage	25.287
	SRR8316897	Juvenile bud stage	11.129
	SRR8316894	Third green stage	8.653
	SRR8316900	Third green stage	19.585
	SRR8316901	Third green stage	19.035
	SRR8316898	Complete white stage	17.973
	SRR8316899	Complete white stage	27.627
	SRR8316903	Complete white stage	27.435
	SRR8316902	Silver flowering stage	18.417
	SRR8316904	Silver flowering stage	27.574
	SRR8316905	Silver flowering stage	12.124
	SRR8316906	Gold flowering stage	27.845
	SRR8316907	Gold flowering stage	34.454
	SRR8316908	Gold flowering stage	30.533
SRP132670	SRR6706286	Control	9.436
	SRR6706287	Light intensity 50%	12.146
	SRR6706288	Light intensity 20%	12.563
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.922
	CNS0095593	Slightly white alabastrum(diploid) 2	20.495
	CNS0095594	Slightly white alabastrum(diploid) 3	21.303
	CNS0095595	Whole white alabastrum(diploid) 2	15.550
	CNS0095596	Whole white alabastrum(diploid) 3	17.024
	CNS0095597	Whole white alabastrum(diploid) 4	16.499
	CNS0095598	Silvery flower (diploied) 1	25.142
	CNS0095599	Silvery flower (diploied) 2	18.782
	CNS0095600	Silvery flower (diploied) 3	13.803
	CNS0095601	Golden flower (diploid) 1	19.483
	CNS0095602	Golden flower (diploid) 2	12.286
	CNS0095603	Golden flower (diploid) 3	11.526
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.404
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.730
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.992
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.286
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.914
	CNS0095610	Silvery flower (tetraploid) 1	31.023
	CNS0095611	Silvery flower (tetraploid) 2	17.974
	CNS0095612	Silvery flower (tetraploid) 3	33.770
	CNS0095613	Golden flower (tetraploid) 1	23.103
	CNS0095614	Golden flower (tetraploid) 2	19.338
	CNS0095615	Golden flower (tetraploid) 3	20.450
CRA001975	CRR073297	Stem 1	10.141
	CRR073298	Stem 2	10.315
	CRR073299	Stem 3	1.917
	CRR073300	Leaf 1	10.579
	CRR073301	Leaf 2	9.107
	CRR073302	Leaf 3	1.925
	CRR073303	Juvenile bud 1	2.993
	CRR073304	Juvenile bud 2	0.596
	CRR073305	Juvenile bud 3	2.103
	CRR073306	Third green 1	1.145
	CRR073307	Third green 2	0.643
	CRR073308	Third green 3	1.062
	CRR073309	Second white 1	0.757
	CRR073310	Second white 2	2.769
	CRR073311	Second white 3	2.004
	CRR073312	Silver flowering 1	1.172
	CRR073313	Silver flowering 2	0.646
	CRR073314	Silver flowering 3	0.443
	CRR073315	Gold flowering 1	0.276
	CRR073316	Gold flowering 2	1.306
	CRR073317	Gold flowering 3	0.419
	CRR073318	Tawny withering 1	3.618
	CRR073319	Tawny withering 2	7.714
	CRR073320	Tawny withering 3	6.217