Detail information of GWHGAAZE029468


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI39676.38.78484E-35unnamed protein product [Vitis vinifera]
Swissprottr|Q9SBC5|PIF3_ARATH6E-10Transcription factor PIF3
trEMBLtr|F6I4I6|F6I4I6_VITVI4E-29Putative uncharacterized protein {ECO:0000313|EMBL:CCB61970.1}
TAIR10AT4G28815.10.0006basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2368887123689437+
GWHAAZE00000009mRNA2368887123689437+
GWHAAZE00000009exon2368887123689209+
GWHAAZE00000009exon2368929423689437+
GWHAAZE00000009CDS2368887123689209+
GWHAAZE00000009CDS2368929423689437+
Transcript Sequence

Network for GWHGAAZE029468

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12126PIF3 Plant hormone signal transduction map04075
Circadian rhythm - plantmap04712

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.387
SRR3591706second leaf2.763
SRR3591707mature leaf1.879
SRR3591708Shoot apex5.740
SRR3591709Stem15.595
SRR3591710White floral bud2.223
SRR3591711White flower4.581
SRR3591712Green floral bud0.580
SRR3591713Yellow flower2.563
SRP173429 SRR8316895Juvenile bud stage 0.348
SRR8316896Juvenile bud stage 0.349
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.411
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.139
SRR8316903Complete white stage 0.298
SRR8316902Silver flowering stage0.367
SRR8316904Silver flowering stage0.199
SRR8316905Silver flowering stage0.429
SRR8316906Gold flowering stage 1.116
SRR8316907Gold flowering stage 1.143
SRR8316908Gold flowering stage 1.110
SRP132670SRR6706286Control0.251
SRR6706287Light intensity 50%0.330
SRR6706288Light intensity 20%0.242
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.627
CNS0095593Slightly white alabastrum(diploid) 20.191
CNS0095594Slightly white alabastrum(diploid) 31.086
CNS0095595Whole white alabastrum(diploid) 20.526
CNS0095596Whole white alabastrum(diploid) 30.082
CNS0095597Whole white alabastrum(diploid) 40.450
CNS0095598Silvery flower (diploied) 13.519
CNS0095599Silvery flower (diploied) 21.737
CNS0095600Silvery flower (diploied) 30.453
CNS0095601Golden flower (diploid) 10.910
CNS0095602Golden flower (diploid) 21.683
CNS0095603Golden flower (diploid) 31.665
CNS0095604Slightly white alabastrum(tetraploid) 10.137
CNS0095605Slightly white alabastrum(tetraploid) 20.112
CNS0095606Slightly white alabastrum(tetraploid) 30.947
CNS0095607Whole white alabastrum(tetraploid) 11.211
CNS0095608Whole white alabastrum(tetraploid) 20.111
CNS0095609Whole white alabastrum(tetraploid) 30.044
CNS0095610Silvery flower (tetraploid) 11.155
CNS0095611Silvery flower (tetraploid) 21.975
CNS0095612Silvery flower (tetraploid) 31.015
CNS0095613Golden flower (tetraploid) 11.063
CNS0095614Golden flower (tetraploid) 21.737
CNS0095615Golden flower (tetraploid) 30.793
CRA001975CRR073297Stem 10.162
CRR073298Stem 20.120
CRR073299Stem 30.056
CRR073300Leaf 10.118
CRR073301Leaf 20.179
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.233
CRR073306Third green 10.055
CRR073307Third green 20.000
CRR073308Third green 30.495
CRR073309Second white 10.735
CRR073310Second white 20.291
CRR073311Second white 30.697
CRR073312Silver flowering 10.044
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.130
CRR073317Gold flowering 30.142
CRR073318Tawny withering 11.773
CRR073319Tawny withering 21.023
CRR073320Tawny withering 31.002