Gene detail

Detail information of GWHGAAZE029469

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087570.1	1.5537E-149	PREDICTED: transcription factor MYB86-like [Sesamum indicum]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	1E-79	Transcription factor MYB86
trEMBL	tr\|F6I4I7\|F6I4I7_VITVI	3E-147	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61971.1}
TAIR10	AT1G09540.1	4E-72	myb domain protein 61

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	23752076	23753875	+
GWHAAZE00000009	mRNA	23752076	23753875	+
GWHAAZE00000009	exon	23752076	23752208	+
GWHAAZE00000009	exon	23752729	23752858	+
GWHAAZE00000009	exon	23752954	23753875	+
GWHAAZE00000009	CDS	23752076	23752208	+
GWHAAZE00000009	CDS	23752729	23752858	+
GWHAAZE00000009	CDS	23752954	23753875	+

Transcript Sequence
>GWHTAAZE029503 ATGGGTAGACACTCTTGCTGTTACAAACAGAAGCTAAGAAAAGGGCTTTGGTCTCCTGAGGAAGATGAGAAGCTTATGAAGCATATTAATAAGTATGGTCATGGCTGTTGGAGCTCTGTTCCTAAACTTGCTGGTCTTCAAAGGTGTGGGAAGAGCTGCAGATTGAGGTGGATTAACTACTTGAGACCAGACTTAAAAAGAGGGACATTTTCACAAGAAGAAGAGAATTTGATAATTGAACTACATGCAGTTCTAGGCAACAAATGGTCACAAATCGCGGGACAATTACCAGGAAGAACCGACAATGAAATAAAGAACCTGTGGAACTCTTCCATAAAAAAGAAGCTGAAGCAAAGAGGCATTGACCCCAACACTCACAAGCCATTATCCGAGGTCGAGACTGAAGAAATGGCCAACAAAAACAGTGACAGTAAAACTGAACTCTCGAGCGAAGTCAACTATATCGAAGGCGAGACTTCGAGCCAATTGCCTAAATACCCACTAATCGAAAACACCGCGGTCCCTCCTTCGCACCAGCAAACCCAAGAATTCTTTCTCAACAGGTTCATTGCCTCACATGAAAATTCAACTAGTACTAGTATAAAGAATTCCGATTTTTCGGGGTACTTAAATAATTTCCATCAATTAGGCTTTGGACCGACTGATATTGGGCTATCGGTCAACCCAAATTCTTCTGGTTTCTTTAATTCCAATTCCAAAGCTTCTGATCTGATACAGGATTTCAATTCCTCTACTATCCCTTCTTCCTCTTCAATCCCCAATGCTTCGCCGCGTATTGGTCCTGTGAGTTCTTTGCTCAATAATTGGGACGCCAATACCATTAGTAATAGTGGTAGTAGCAATAATGGGAGCAGCAGTAGTATGTTTTACGATAATTATTCGCCATGGGGACTAACTGATTGCGGAAAAACTGAGAAAGACACGCAGATTCAGATTCTGGAAGGGGACCCAGATGAAATGAAATGGGCAGAATATGTACAAACGCCATTTTTACTAGGAAATGGGATTCAAAATACTGGTCAGGATCATGTTTTTGGCGAGGCGAAAATCGAAACAAATTTTGCAAATTGGAATCAGAATCAACAGCAAGTGCCTCTACAATCTGCAGAGATGTATAATAAGCATTTCCAGAGACTTTCAGCATCATTCGGACATTTTTCTTAG

Network for GWHGAAZE029469

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	6.30E-15
PF00249.32	Myb_DNA-binding	67	109	9.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.160
	SRR3591706	second leaf	6.258
	SRR3591707	mature leaf	6.165
	SRR3591708	Shoot apex	14.300
	SRR3591709	Stem	11.224
	SRR3591710	White floral bud	12.840
	SRR3591711	White flower	9.417
	SRR3591712	Green floral bud	4.585
	SRR3591713	Yellow flower	1.596
SRP173429	SRR8316895	Juvenile bud stage	1.049
	SRR8316896	Juvenile bud stage	0.911
	SRR8316897	Juvenile bud stage	0.206
	SRR8316894	Third green stage	2.981
	SRR8316900	Third green stage	5.199
	SRR8316901	Third green stage	4.024
	SRR8316898	Complete white stage	6.543
	SRR8316899	Complete white stage	26.324
	SRR8316903	Complete white stage	9.801
	SRR8316902	Silver flowering stage	1.056
	SRR8316904	Silver flowering stage	1.246
	SRR8316905	Silver flowering stage	0.419
	SRR8316906	Gold flowering stage	0.524
	SRR8316907	Gold flowering stage	1.024
	SRR8316908	Gold flowering stage	0.439
SRP132670	SRR6706286	Control	5.193
	SRR6706287	Light intensity 50%	5.744
	SRR6706288	Light intensity 20%	5.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.470
	CNS0095593	Slightly white alabastrum(diploid) 2	4.490
	CNS0095594	Slightly white alabastrum(diploid) 3	3.165
	CNS0095595	Whole white alabastrum(diploid) 2	3.535
	CNS0095596	Whole white alabastrum(diploid) 3	1.130
	CNS0095597	Whole white alabastrum(diploid) 4	3.486
	CNS0095598	Silvery flower (diploied) 1	3.577
	CNS0095599	Silvery flower (diploied) 2	1.803
	CNS0095600	Silvery flower (diploied) 3	2.636
	CNS0095601	Golden flower (diploid) 1	2.962
	CNS0095602	Golden flower (diploid) 2	3.311
	CNS0095603	Golden flower (diploid) 3	2.983
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.382
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.656
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.373
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.148
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.713
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.482
	CNS0095610	Silvery flower (tetraploid) 1	1.673
	CNS0095611	Silvery flower (tetraploid) 2	2.260
	CNS0095612	Silvery flower (tetraploid) 3	0.631
	CNS0095613	Golden flower (tetraploid) 1	0.269
	CNS0095614	Golden flower (tetraploid) 2	0.359
	CNS0095615	Golden flower (tetraploid) 3	0.338
CRA001975	CRR073297	Stem 1	4.522
	CRR073298	Stem 2	4.264
	CRR073299	Stem 3	1.657
	CRR073300	Leaf 1	10.312
	CRR073301	Leaf 2	11.285
	CRR073302	Leaf 3	9.077
	CRR073303	Juvenile bud 1	15.845
	CRR073304	Juvenile bud 2	5.554
	CRR073305	Juvenile bud 3	30.551
	CRR073306	Third green 1	0.820
	CRR073307	Third green 2	1.085
	CRR073308	Third green 3	2.376
	CRR073309	Second white 1	0.599
	CRR073310	Second white 2	0.075
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.710
	CRR073316	Gold flowering 2	2.711
	CRR073317	Gold flowering 3	0.610
	CRR073318	Tawny withering 1	12.019
	CRR073319	Tawny withering 2	1.986
	CRR073320	Tawny withering 3	15.136