Gene detail

Detail information of GWHGAAZE029476

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04869.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GYD9\|SDE3_ARATH	5E-65	Probable RNA helicase SDE3
trEMBL	tr\|A0A068U9J3\|A0A068U9J3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_14 {ECO:0000313\|EMBL:CDP04869.1}
TAIR10	AT1G05460.1	5E-61	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	23907811	23911558	+
GWHAAZE00000009	mRNA	23907811	23911558	+
GWHAAZE00000009	exon	23907811	23908665	+
GWHAAZE00000009	exon	23909941	23910162	+
GWHAAZE00000009	exon	23910563	23911558	+
GWHAAZE00000009	CDS	23907811	23908665	+
GWHAAZE00000009	CDS	23909941	23910162	+
GWHAAZE00000009	CDS	23910563	23911558	+

Transcript Sequence
>GWHTAAZE029510 ATGTCAGTCTTCCTCGAACTTTTGCGTTGTGTCCTTTGCTGTGAAGAGGAGGATCCTCGACCCTACCGTCAGGATCATGATGTTACACGTTTAATTCGGAATAGATTTCAAAGCCCAACTACTGCTGCTGATTATACTCAAATCCCCAGTTATGATCCTCATCCGAGGACCATTTCTCCTGCTAATTCCACTTATTTCATAAATGCACATACAAGCACCCGGATTCAGTCCCCATTCAGTTCATTTGCTTCGAATTTTCCCAACGCAACAACAACAACTCCCTCTGCTGTTGCTAAACCCAGAATTGAAACCCCTAAAAGACACCCACAACCACAAGTCTCAGCTGCTAACTCAACAACTACTCCCTCTGCTGTTGCTAAACCCAGAATTGAAACCCCTAAAAGACACCCACAGCCACAAGTCTCCGCTGCTAACTCAACAACTCCCTCCGCTGTTGCTAAACCCAAAACTGAAACTCCTAAAAGAACCCTTCCAGCCCCAGATGCTTACTCAACAACTGACCAAAAACTTACCCATAAGTCTTCCCTTAAGCCACCTCCATCTAGACCAGATTTATCATTGGCATCAGCTTCGTCTTCATCTTCATTTGGGACCCCTCAATTGTCCATTAAACCTATTCTGTCTCAAGCTCCGTTTAACCCGACAATACACCAGACGAAAACCAATTACGTATTGGTTGAGAAGGGTGCCACCCCTCTTTATATGATACCGGAGGATATCAAAGGTCTGATTCAGAAAGACATTGTCCCTGGTGTTCTTAAAAAGCGTTTGTCTCCATCAAATTACACTGAATACTTTGACACGCTGCTTTATGCTGAGAACTACTATCTTGAGAAATGGGAGGGGTTTGAAATGAAGAATGTAAGTTTGCAATTGCACAAAGCAGCAATTTATGGTTGGAAAAGCAAAAACAAGCATTTGAATGGAAGTGATGAGAAAGACGATAAAATCTTTGTAGCATTTGAAATTGATTCAGTTCGTGAGAGGCGTCCATTCCTTCTATCAAGGGACTTTGCCTCTGTACGACCTTCCGGCAGAGAAGTTGAGCCATTTCAGGGTATTATCTACCGGGTGGTGAAGAGTAATCTTGTACTAGTTGAATTTGGAGAGGACTTCCATTCCCAACACTACTCATCCTGTGAATACGATGTTAAGTTCTCATTCAACAGAGTATGTCTTAAAAGGGCTCACCAAGCAATTGGAGCTGCATCCGATGTTCTTTTAAGAAAATTCCTCTTCCCCGAACAAATGCCTAAAATCTACCCCATTCAAACACAAGTGTTGGTCAATCACAAACTTGATATGGAACAAGCCAATGCTGTTCGTTATATTCTAAGATGTCAGGACCCACCACCTTATCTTGTTGAGGGCCCACTCTCTGTGACTAATTCAAAAGAGCGACCACAATATGCAAACAATTCAAAAGAATTGTCGAGAACTGGAGTTGTGGTTCGAGAAGCAGTACTCCATCTTTGTCGAACCACTCCATCATCACGGATTCTTATATGTTCACCTCTGAATAGCACTTGCGACATGCTCATGAGAAGCCTTCAGAAAGAAATTCCTGAGTCTGATATGTTTCGAGCAAATGCTGCCTTTAGAGAGGTCGATGGGGTGCCTATTGACATACTCCCTTCATGTCTTTATAAAGGGGAATGCTTTTCGTGTCCCTCGCTTAAGGAACTTAAGAAGTACAAGGTGATTTTATCCACTTTCATGAGTAGCTTTAGGTTGCGTGATGAAGGAATAGTTGCTGGGCATTTTAGTCATATTTTTCTGGTGGACGCCTCGTGTGCCACTGAACCAGAGACTATGGTGCCTCTGGCCAACCTGGCTAATGAGAGGACGGTTGTGGTTATAACAGGTGCACCGCAGAGCCGTTCGGGTTGGGTTCACTCTAATATTGCAAGGCAGTACGGTTTGATGACATCGTACTTTGAGAGGCTTCGCAAGATCAAGGCCTATAAGAGTCTTGATCCCAACTATATAACGCAGCTGAAGGATGCAGGACAGAAATCAGATGACAGATATAATTCACTGTCATTCATATGA

Network for GWHGAAZE029476

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0261

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.239
	SRR3591706	second leaf	6.662
	SRR3591707	mature leaf	13.081
	SRR3591708	Shoot apex	7.602
	SRR3591709	Stem	29.819
	SRR3591710	White floral bud	12.270
	SRR3591711	White flower	17.023
	SRR3591712	Green floral bud	15.334
	SRR3591713	Yellow flower	5.191
SRP173429	SRR8316895	Juvenile bud stage	11.104
	SRR8316896	Juvenile bud stage	13.439
	SRR8316897	Juvenile bud stage	4.074
	SRR8316894	Third green stage	4.477
	SRR8316900	Third green stage	8.353
	SRR8316901	Third green stage	11.991
	SRR8316898	Complete white stage	1.847
	SRR8316899	Complete white stage	18.165
	SRR8316903	Complete white stage	6.038
	SRR8316902	Silver flowering stage	5.422
	SRR8316904	Silver flowering stage	5.258
	SRR8316905	Silver flowering stage	2.527
	SRR8316906	Gold flowering stage	8.802
	SRR8316907	Gold flowering stage	7.007
	SRR8316908	Gold flowering stage	7.215
SRP132670	SRR6706286	Control	13.057
	SRR6706287	Light intensity 50%	10.970
	SRR6706288	Light intensity 20%	9.681
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.834
	CNS0095593	Slightly white alabastrum(diploid) 2	7.402
	CNS0095594	Slightly white alabastrum(diploid) 3	8.048
	CNS0095595	Whole white alabastrum(diploid) 2	5.961
	CNS0095596	Whole white alabastrum(diploid) 3	5.054
	CNS0095597	Whole white alabastrum(diploid) 4	5.176
	CNS0095598	Silvery flower (diploied) 1	11.254
	CNS0095599	Silvery flower (diploied) 2	6.797
	CNS0095600	Silvery flower (diploied) 3	8.549
	CNS0095601	Golden flower (diploid) 1	11.625
	CNS0095602	Golden flower (diploid) 2	15.305
	CNS0095603	Golden flower (diploid) 3	13.311
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.103
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.971
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.357
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.686
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.761
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.089
	CNS0095610	Silvery flower (tetraploid) 1	6.014
	CNS0095611	Silvery flower (tetraploid) 2	8.311
	CNS0095612	Silvery flower (tetraploid) 3	2.968
	CNS0095613	Golden flower (tetraploid) 1	1.789
	CNS0095614	Golden flower (tetraploid) 2	4.123
	CNS0095615	Golden flower (tetraploid) 3	1.909
CRA001975	CRR073297	Stem 1	14.935
	CRR073298	Stem 2	13.106
	CRR073299	Stem 3	12.590
	CRR073300	Leaf 1	10.729
	CRR073301	Leaf 2	13.160
	CRR073302	Leaf 3	12.397
	CRR073303	Juvenile bud 1	8.334
	CRR073304	Juvenile bud 2	5.066
	CRR073305	Juvenile bud 3	14.557
	CRR073306	Third green 1	1.887
	CRR073307	Third green 2	0.940
	CRR073308	Third green 3	1.754
	CRR073309	Second white 1	1.127
	CRR073310	Second white 2	0.527
	CRR073311	Second white 3	0.261
	CRR073312	Silver flowering 1	0.410
	CRR073313	Silver flowering 2	0.800
	CRR073314	Silver flowering 3	0.600
	CRR073315	Gold flowering 1	17.177
	CRR073316	Gold flowering 2	28.472
	CRR073317	Gold flowering 3	16.965
	CRR073318	Tawny withering 1	29.401
	CRR073319	Tawny withering 2	22.158
	CRR073320	Tawny withering 3	30.590