Gene detail

Detail information of GWHGAAZE029484

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092380.1	0	PREDICTED: WD-40 repeat-containing protein MSI1 [Sesamum indicum]
COG	YP_001865693.1	2E-11	hypothetical protein Npun_R2146
Swissprot	tr\|O22466\|MSI1_SOLLC	0	WD-40 repeat-containing protein MSI1
trEMBL	tr\|M1C6W9\|M1C6W9_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400061016}
TAIR10	AT5G58230.1	9E-150	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	24024246	24031120	+
GWHAAZE00000009	mRNA	24024246	24031120	+
GWHAAZE00000009	exon	24024246	24024403	+
GWHAAZE00000009	exon	24025968	24026294	+
GWHAAZE00000009	exon	24029108	24029229	+
GWHAAZE00000009	exon	24029394	24029472	+
GWHAAZE00000009	exon	24030745	24030954	+
GWHAAZE00000009	exon	24031118	24031120	+
GWHAAZE00000009	five_prime_UTR	24024246	24024253	+
GWHAAZE00000009	CDS	24024254	24024403	+
GWHAAZE00000009	CDS	24025968	24026294	+
GWHAAZE00000009	CDS	24029108	24029229	+
GWHAAZE00000009	CDS	24029394	24029472	+
GWHAAZE00000009	CDS	24030745	24030954	+
GWHAAZE00000009	CDS	24031118	24031120	+

Transcript Sequence
>GWHTAAZE029518 TTCAGAAGATGATATTGGGGACCCACACCTCCGAGAATGAGCCTAATTATCTTATGCTAGCTCAGGTTCAGCTCCCTCTCGAGGATGCTGAGAACGACGCTCGTCATTATGACGATGATCGGTCCGATTTTGGGGGGTTCGGTTGTGCCAATGGCAAGGTTCAAATAATCCAGCAAATAAATCATGATGGGGAGGTCAACCGAGCTCGTTATATGCCTCAACACCCATTTATTATTGCCACCAAAACTGTTAGCACAGAAGTATATGTGTTTGATTATAGCAAGCACCCGTCAAAGCCACCTCTAGATGGTGCATGCAGCCCTGATTTGAGGTTGAGGGGCCATAGCACTGAAGGGTATAGTCTATCATGGAGTCAATTCAAGCAAGGCCACTTGTTAAGTGGTTCTGATGATGCCCAAATATGCTTGTGGGACATTAATGCTACTCCAAAGAACAAGTCCATTGATGCAATGCAGATATTTAAGGTTAACTGCTTAGCATTTAATCCTTTTAATGAATGGGTTGTGGCGGGGTCCATCGATAAGACTGTTAAGTTATTCGATATACGCAAAATCTCAACTGCTCTCCATACATTTGATTGCCACAAAGAGGAGGTTTTCCAAATTGGGTGGAATCCGAAGAATGAGACCATCTTAGCTTCTTGTTGCCTTGGTAGAAGACTCATGACTCCAGAGGATGCTGAAGACGGCCCACCGGAGCTGCTATTTATACACGGGGGTCACACTAGTAAAATATCGGACTTCTCTTGGAACCCATGCGAAGATTGGGTGGTGGCTAGTGTAGCCGAAGATAACATTCTCCAAATATGGAAAATGGCAGAGAATATATACCATGATGAGGATGATCTACCCCACCGTGAGATGAACCCACTAAAGTGA

Network for GWHGAAZE029484

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	109	142	0.28
PF00400.33	WD40	160	185	2.70E-05
PF00400.33	WD40	239	275	0.00068

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10752	RBBP4, HAT2, CAF1, MIS16	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.044
	SRR8316896	Juvenile bud stage	0.148
	SRR8316897	Juvenile bud stage	0.058
	SRR8316894	Third green stage	0.062
	SRR8316900	Third green stage	0.048
	SRR8316901	Third green stage	0.055
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.018
	SRR6706287	Light intensity 50%	0.058
	SRR6706288	Light intensity 20%	0.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.240
	CNS0095595	Whole white alabastrum(diploid) 2	0.056
	CNS0095596	Whole white alabastrum(diploid) 3	0.002
	CNS0095597	Whole white alabastrum(diploid) 4	0.367
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.231
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.180
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.589
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.702
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.293
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.013
	CRR073298	Stem 2	0.044
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.379
	CRR073301	Leaf 2	0.002
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.043
	CRR073304	Juvenile bud 2	0.042
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.089
	CRR073308	Third green 3	0.075
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000