Detail information of GWHGAAZE029488


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011022354.10PREDICTED: endoglucanase 25-like [Populus euphratica]
COGYP_007159459.17E-72Cellulase
Swissprottr|Q38890|GUN25_ARATH0Endoglucanase 25
trEMBLtr|A0A068F1W1|A0A068F1W1_GOSHI0Endoglucanase {ECO:0000256|RuleBase:RU361166}
TAIR10AT5G49720.10glycosyl hydrolase 9A1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2406180824066928-
GWHAAZE00000009mRNA2406180824066928-
GWHAAZE00000009exon2406180824062209-
GWHAAZE00000009exon2406282424062996-
GWHAAZE00000009exon2406316024063295-
GWHAAZE00000009exon2406422524064686-
GWHAAZE00000009exon2406541024065720-
GWHAAZE00000009exon2406655724066699-
GWHAAZE00000009exon2406675624066928-
GWHAAZE00000009CDS2406675624066928-
GWHAAZE00000009CDS2406655724066699-
GWHAAZE00000009CDS2406541024065720-
GWHAAZE00000009CDS2406422524064686-
GWHAAZE00000009CDS2406316024063295-
GWHAAZE00000009CDS2406282424062996-
GWHAAZE00000009CDS2406180824062209-
Transcript Sequence

Network for GWHGAAZE029488

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00759.20Glyco_hydro_9905632.10E-125
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01179E3.2.1.4 Metabolic pathways map01100
Starch and sucrose metabolismmap00500
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf296.556
SRR3591706second leaf115.480
SRR3591707mature leaf35.237
SRR3591708Shoot apex79.569
SRR3591709Stem669.741
SRR3591710White floral bud40.812
SRR3591711White flower24.206
SRR3591712Green floral bud68.495
SRR3591713Yellow flower4.851
SRP173429 SRR8316895Juvenile bud stage 103.433
SRR8316896Juvenile bud stage 106.948
SRR8316897Juvenile bud stage 62.498
SRR8316894Third green stage 26.699
SRR8316900Third green stage 89.585
SRR8316901Third green stage 99.282
SRR8316898Complete white stage 34.127
SRR8316899Complete white stage 98.672
SRR8316903Complete white stage 33.032
SRR8316902Silver flowering stage26.729
SRR8316904Silver flowering stage27.757
SRR8316905Silver flowering stage10.150
SRR8316906Gold flowering stage 27.971
SRR8316907Gold flowering stage 26.551
SRR8316908Gold flowering stage 34.818
SRP132670SRR6706286Control90.229
SRR6706287Light intensity 50%115.688
SRR6706288Light intensity 20%128.596
CNP0000432CNS0095592Slightly white alabastrum(diploid) 188.551
CNS0095593Slightly white alabastrum(diploid) 2122.838
CNS0095594Slightly white alabastrum(diploid) 389.435
CNS0095595Whole white alabastrum(diploid) 291.167
CNS0095596Whole white alabastrum(diploid) 360.293
CNS0095597Whole white alabastrum(diploid) 470.484
CNS0095598Silvery flower (diploied) 146.009
CNS0095599Silvery flower (diploied) 275.079
CNS0095600Silvery flower (diploied) 336.801
CNS0095601Golden flower (diploid) 135.427
CNS0095602Golden flower (diploid) 232.810
CNS0095603Golden flower (diploid) 331.458
CNS0095604Slightly white alabastrum(tetraploid) 167.162
CNS0095605Slightly white alabastrum(tetraploid) 258.185
CNS0095606Slightly white alabastrum(tetraploid) 3156.852
CNS0095607Whole white alabastrum(tetraploid) 142.447
CNS0095608Whole white alabastrum(tetraploid) 236.262
CNS0095609Whole white alabastrum(tetraploid) 394.263
CNS0095610Silvery flower (tetraploid) 123.245
CNS0095611Silvery flower (tetraploid) 214.597
CNS0095612Silvery flower (tetraploid) 335.422
CNS0095613Golden flower (tetraploid) 12.903
CNS0095614Golden flower (tetraploid) 218.051
CNS0095615Golden flower (tetraploid) 39.256
CRA001975CRR073297Stem 1181.766
CRR073298Stem 2128.621
CRR073299Stem 3131.552
CRR073300Leaf 1145.053
CRR073301Leaf 2156.770
CRR073302Leaf 3140.432
CRR073303Juvenile bud 1136.920
CRR073304Juvenile bud 2138.526
CRR073305Juvenile bud 3157.274
CRR073306Third green 1314.463
CRR073307Third green 2236.830
CRR073308Third green 3222.003
CRR073309Second white 160.254
CRR073310Second white 237.956
CRR073311Second white 339.867
CRR073312Silver flowering 126.095
CRR073313Silver flowering 227.170
CRR073314Silver flowering 312.610
CRR073315Gold flowering 179.660
CRR073316Gold flowering 2111.635
CRR073317Gold flowering 359.912
CRR073318Tawny withering 1306.733
CRR073319Tawny withering 2197.773
CRR073320Tawny withering 3375.886