Gene detail

Detail information of GWHGAAZE029490

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009783126.1	0	PREDICTED: uncharacterized protein LOC104231771 isoform X1 [Nicotiana sylvestris]
COG	YP_005446449.1	9E-23	hypothetical protein PSMK_23930
trEMBL	tr\|K4B1J5\|K4B1J5_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g102670.2.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	24093388	24097793	-
GWHAAZE00000009	mRNA	24093388	24097793	-
GWHAAZE00000009	exon	24097446	24097793	-
GWHAAZE00000009	exon	24096759	24096922	-
GWHAAZE00000009	exon	24094284	24095004	-
GWHAAZE00000009	exon	24093645	24093736	-
GWHAAZE00000009	exon	24093388	24093529	-
GWHAAZE00000009	CDS	24097446	24097793	-
GWHAAZE00000009	CDS	24096759	24096922	-
GWHAAZE00000009	CDS	24094284	24095004	-
GWHAAZE00000009	CDS	24093645	24093736	-
GWHAAZE00000009	CDS	24093388	24093529	-

Transcript Sequence
>GWHTAAZE029524 ATGGAACGCCCGGTCAACAAATATGCGAACACAGCCGCCTCCGGCGACATCGCCGATGGTGAACGCCGCCGCAGTGTGGTGGTGGAGCTGCCACTCGGAGACGCCGTTGACACATTCGACCTAGAGAAGGCGGTTTGCAGCCACGGCTTGTTCATGATGGCCCCCAATCACTGGGACCCACTCTCCAAAACCCTAAAACGCCCATTGCGCCTCGATTCTAATGAAGATACTGCTTCTTCTTCTTCACTCTTGGTACAAATCTCTCATCCTTCTCATACTCTTGGATCTCTCAGTCTCCGTGTGTTTGGCACCGACTATCTCTCTCCTCTGCACCGACAATCTTTGCTGGATCAAGTGAGGCGAATGCTAAGATTGTCTAAGGCTGAGGAGAGGAATTTGAGGGAGTTCCGAGAAGTTTATGGTGGAGCTAAGGAGAGGGGTTTTGGGAGAGTGTTTAGGTCGCCGACTTTGTTTGAGGACATGGTCAAATGCATACTTCTCTGCAATTGCCAGTGGTCAAGGACTTTGAGCATGGCTAGAGCACTTTGTGAGCTTCAACTAGAATTACAGTGTCCCTTACTTGGTACATCAATTGCTAAAGTTGATAATGGTTCAAATATAAGTTGCCCAACAGCCGAAACTGAGGATTTTGCTCCAACGACACCGCAAAAAGAGTTGAAGAGAAAGACTCCTAGTGATGGTTCAAATATCAACAATCAAACAAACGAAAAAGTGACTGATAATTTTGTTCCAACAACTCCTGCAGTTAAAGAGAAACAAAAGGCTGAAGCGTTGAAGAGTTCCACAAGCTTACTCTCATCACATAAAGAAGGGGACTATTGTAAGCATTGTGACTCATTTTGGTCTTCAATTCCAACAGATGAGGTTAACTCGCGTTCTTCTTATGATCTTCAGTCAAATAGACTTGGAAATTTTCCTAGCCCAAGAGAACTAGCGAAACTTGACGAGAAATTTCTGGCAAAGCGGTGTAATCTTGGCTATAGAGCAAGTCGAATTTTGAGTCTCGCTAAGAGTGTTGTTGAAGGGAGGATTCAATTGAGACAACTTGAAGAAGCTTCGAGTGAACTAAGCTTATCCAACTATGATAAGCTGGGTGATCAGCTGAAAGGAATTGATGGGTTTGGTCCTTTTACATGTGCCAATGTGCTCATGTGCATGGGATTTTACCATGTGATTCCAACCGATTCTGAAACTATCAGGCATTTAAAGCAGGTCCATGCAGTAAGCTCCACTGTTCAAACAGTTAAAGAACGAGCAGAAGTGATGTACGAAAAGTATGCACCTTTTCAATTCTTGGCATATTGGTCAGAGGTGTGGTCCTTCTATGAGGAAACATTTGGAAAAACGAGTGAAATGCCTCACTCAGATTATAAACTTATTACTGCCGCTAATATGAGACCCAAAGCTAGCCGCAACCAGAAGAAGAGGACTAAGAGATCCTTATAG

Network for GWHGAAZE029490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0128

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.644
	SRR3591706	second leaf	3.652
	SRR3591707	mature leaf	1.643
	SRR3591708	Shoot apex	11.497
	SRR3591709	Stem	5.199
	SRR3591710	White floral bud	1.472
	SRR3591711	White flower	1.780
	SRR3591712	Green floral bud	1.363
	SRR3591713	Yellow flower	0.691
SRP173429	SRR8316895	Juvenile bud stage	5.305
	SRR8316896	Juvenile bud stage	6.576
	SRR8316897	Juvenile bud stage	2.529
	SRR8316894	Third green stage	2.522
	SRR8316900	Third green stage	4.655
	SRR8316901	Third green stage	5.059
	SRR8316898	Complete white stage	1.158
	SRR8316899	Complete white stage	8.800
	SRR8316903	Complete white stage	2.268
	SRR8316902	Silver flowering stage	0.975
	SRR8316904	Silver flowering stage	1.450
	SRR8316905	Silver flowering stage	0.876
	SRR8316906	Gold flowering stage	2.923
	SRR8316907	Gold flowering stage	1.931
	SRR8316908	Gold flowering stage	2.231
SRP132670	SRR6706286	Control	3.691
	SRR6706287	Light intensity 50%	3.523
	SRR6706288	Light intensity 20%	2.851
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.724
	CNS0095593	Slightly white alabastrum(diploid) 2	5.004
	CNS0095594	Slightly white alabastrum(diploid) 3	5.754
	CNS0095595	Whole white alabastrum(diploid) 2	2.514
	CNS0095596	Whole white alabastrum(diploid) 3	2.394
	CNS0095597	Whole white alabastrum(diploid) 4	2.876
	CNS0095598	Silvery flower (diploied) 1	12.210
	CNS0095599	Silvery flower (diploied) 2	7.971
	CNS0095600	Silvery flower (diploied) 3	5.996
	CNS0095601	Golden flower (diploid) 1	6.943
	CNS0095602	Golden flower (diploid) 2	8.705
	CNS0095603	Golden flower (diploid) 3	6.880
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.010
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.493
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.101
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.114
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.169
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.941
	CNS0095610	Silvery flower (tetraploid) 1	4.841
	CNS0095611	Silvery flower (tetraploid) 2	5.894
	CNS0095612	Silvery flower (tetraploid) 3	2.241
	CNS0095613	Golden flower (tetraploid) 1	2.509
	CNS0095614	Golden flower (tetraploid) 2	4.434
	CNS0095615	Golden flower (tetraploid) 3	2.401
CRA001975	CRR073297	Stem 1	4.954
	CRR073298	Stem 2	4.684
	CRR073299	Stem 3	4.830
	CRR073300	Leaf 1	2.896
	CRR073301	Leaf 2	3.347
	CRR073302	Leaf 3	2.624
	CRR073303	Juvenile bud 1	2.815
	CRR073304	Juvenile bud 2	2.770
	CRR073305	Juvenile bud 3	2.891
	CRR073306	Third green 1	0.428
	CRR073307	Third green 2	0.067
	CRR073308	Third green 3	0.967
	CRR073309	Second white 1	0.901
	CRR073310	Second white 2	0.500
	CRR073311	Second white 3	0.809
	CRR073312	Silver flowering 1	0.532
	CRR073313	Silver flowering 2	0.455
	CRR073314	Silver flowering 3	0.111
	CRR073315	Gold flowering 1	3.928
	CRR073316	Gold flowering 2	3.309
	CRR073317	Gold flowering 3	3.260
	CRR073318	Tawny withering 1	11.513
	CRR073319	Tawny withering 2	7.937
	CRR073320	Tawny withering 3	7.817