Detail information of GWHGAAZE029530


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003633412.18.78183E-97PREDICTED: zinc-finger homeodomain protein 4 [Vitis vinifera]
Swissprottr|O64722|ZHD3_ARATH1E-73Zinc-finger homeodomain protein 3
trEMBLtr|F6HJZ6|F6HJZ6_VITVI3E-97Putative uncharacterized protein {ECO:0000313|EMBL:CCB54999.1}
TAIR10AT2G02540.16E-57homeobox protein 21

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2585588925856506+
GWHAAZE00000009mRNA2585588925856506+
GWHAAZE00000009exon2585588925856506+
GWHAAZE00000009CDS2585588925856506+
Transcript Sequence

Network for GWHGAAZE029530

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04770.13ZF-HD_dimer3554.60E-29
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors Familyzf-HD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.573
SRR3591706second leaf2.279
SRR3591707mature leaf1.041
SRR3591708Shoot apex11.438
SRR3591709Stem0.296
SRR3591710White floral bud1.376
SRR3591711White flower0.814
SRR3591712Green floral bud2.909
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.590
SRR8316896Juvenile bud stage 2.688
SRR8316897Juvenile bud stage 1.266
SRR8316894Third green stage 0.804
SRR8316900Third green stage 0.333
SRR8316901Third green stage 1.233
SRR8316898Complete white stage 0.085
SRR8316899Complete white stage 2.629
SRR8316903Complete white stage 0.399
SRR8316902Silver flowering stage0.280
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.788
SRR6706287Light intensity 50%0.391
SRR6706288Light intensity 20%0.662
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.430
CNS0095593Slightly white alabastrum(diploid) 23.994
CNS0095594Slightly white alabastrum(diploid) 32.640
CNS0095595Whole white alabastrum(diploid) 21.588
CNS0095596Whole white alabastrum(diploid) 31.083
CNS0095597Whole white alabastrum(diploid) 41.053
CNS0095598Silvery flower (diploied) 12.443
CNS0095599Silvery flower (diploied) 20.538
CNS0095600Silvery flower (diploied) 30.066
CNS0095601Golden flower (diploid) 12.553
CNS0095602Golden flower (diploid) 20.205
CNS0095603Golden flower (diploid) 30.416
CNS0095604Slightly white alabastrum(tetraploid) 12.865
CNS0095605Slightly white alabastrum(tetraploid) 23.118
CNS0095606Slightly white alabastrum(tetraploid) 38.378
CNS0095607Whole white alabastrum(tetraploid) 12.321
CNS0095608Whole white alabastrum(tetraploid) 20.648
CNS0095609Whole white alabastrum(tetraploid) 31.103
CNS0095610Silvery flower (tetraploid) 10.245
CNS0095611Silvery flower (tetraploid) 20.847
CNS0095612Silvery flower (tetraploid) 30.133
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.113
CNS0095615Golden flower (tetraploid) 30.084
CRA001975CRR073297Stem 11.857
CRR073298Stem 21.011
CRR073299Stem 31.826
CRR073300Leaf 10.186
CRR073301Leaf 20.423
CRR073302Leaf 30.049
CRR073303Juvenile bud 10.147
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.600
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.027
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000