Detail information of GWHGAAZE029555


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00856.10unnamed protein product [Coffea canephora]
Swissprottr|Q9LQ55|DRP2B_ARATH0Dynamin-2B
trEMBLtr|A0A068TX89|A0A068TX89_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313|EMBL:CDP00856.1}
TAIR10AT1G10290.10dynamin-like protein 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2814873928162015-
GWHAAZE00000009mRNA2814873928162015-
GWHAAZE00000009exon2814873928149001-
GWHAAZE00000009exon2814974728149919-
GWHAAZE00000009exon2815067428150741-
GWHAAZE00000009exon2815086928150982-
GWHAAZE00000009exon2815144728151595-
GWHAAZE00000009exon2815169328151840-
GWHAAZE00000009exon2815311228153168-
GWHAAZE00000009exon2815363928153715-
GWHAAZE00000009exon2815398728154119-
GWHAAZE00000009exon2815425728154341-
GWHAAZE00000009exon2815552928155656-
GWHAAZE00000009exon2815575128155834-
GWHAAZE00000009exon2815593828156057-
GWHAAZE00000009exon2815613828156239-
GWHAAZE00000009exon2815667228156819-
GWHAAZE00000009exon2815748128157823-
GWHAAZE00000009exon2815794428158058-
GWHAAZE00000009exon2815821428158275-
GWHAAZE00000009exon2815990428159993-
GWHAAZE00000009exon2816012628160246-
GWHAAZE00000009exon2816037528160425-
GWHAAZE00000009exon2816179628162015-
GWHAAZE00000009five_prime_UTR2816194028162015-
GWHAAZE00000009CDS2816179628161939-
GWHAAZE00000009CDS2816037528160425-
GWHAAZE00000009CDS2816012628160246-
GWHAAZE00000009CDS2815990428159993-
GWHAAZE00000009CDS2815821428158275-
GWHAAZE00000009CDS2815794428158058-
GWHAAZE00000009CDS2815748128157823-
GWHAAZE00000009CDS2815667228156819-
GWHAAZE00000009CDS2815613828156239-
GWHAAZE00000009CDS2815593828156057-
GWHAAZE00000009CDS2815575128155834-
GWHAAZE00000009CDS2815552928155656-
GWHAAZE00000009CDS2815425728154341-
GWHAAZE00000009CDS2815398728154119-
GWHAAZE00000009CDS2815363928153715-
GWHAAZE00000009CDS2815311228153168-
GWHAAZE00000009CDS2815169328151840-
GWHAAZE00000009CDS2815144728151595-
GWHAAZE00000009CDS2815086928150982-
GWHAAZE00000009CDS2815067428150741-
GWHAAZE00000009CDS2814974728149919-
GWHAAZE00000009CDS2814873928149001-
Transcript Sequence

Network for GWHGAAZE029555

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00350.24Dynamin_N422045.20E-29
PF01031.21Dynamin_M2564953.50E-22
PF00169.30PH5766952.90E-10
PF02212.19GED7318174.70E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01528DNM1_3 Phospholipase D signaling pathway map04072
Endocytosismap04144
Endocrine and other factor-regulated calcium reabsorptionmap04961
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf106.424
SRR3591706second leaf57.135
SRR3591707mature leaf51.448
SRR3591708Shoot apex66.007
SRR3591709Stem91.695
SRR3591710White floral bud87.123
SRR3591711White flower91.102
SRR3591712Green floral bud83.699
SRR3591713Yellow flower91.357
SRP173429 SRR8316895Juvenile bud stage 46.412
SRR8316896Juvenile bud stage 63.956
SRR8316897Juvenile bud stage 29.373
SRR8316894Third green stage 29.156
SRR8316900Third green stage 81.195
SRR8316901Third green stage 75.984
SRR8316898Complete white stage 29.334
SRR8316899Complete white stage 101.358
SRR8316903Complete white stage 67.726
SRR8316902Silver flowering stage37.712
SRR8316904Silver flowering stage57.317
SRR8316905Silver flowering stage26.975
SRR8316906Gold flowering stage 97.999
SRR8316907Gold flowering stage 91.635
SRR8316908Gold flowering stage 95.379
SRP132670SRR6706286Control78.855
SRR6706287Light intensity 50%85.534
SRR6706288Light intensity 20%89.455
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.655
CNS0095593Slightly white alabastrum(diploid) 241.270
CNS0095594Slightly white alabastrum(diploid) 332.735
CNS0095595Whole white alabastrum(diploid) 237.000
CNS0095596Whole white alabastrum(diploid) 333.191
CNS0095597Whole white alabastrum(diploid) 436.912
CNS0095598Silvery flower (diploied) 141.932
CNS0095599Silvery flower (diploied) 242.313
CNS0095600Silvery flower (diploied) 397.641
CNS0095601Golden flower (diploid) 138.973
CNS0095602Golden flower (diploid) 286.763
CNS0095603Golden flower (diploid) 389.645
CNS0095604Slightly white alabastrum(tetraploid) 140.440
CNS0095605Slightly white alabastrum(tetraploid) 229.155
CNS0095606Slightly white alabastrum(tetraploid) 395.604
CNS0095607Whole white alabastrum(tetraploid) 124.892
CNS0095608Whole white alabastrum(tetraploid) 220.473
CNS0095609Whole white alabastrum(tetraploid) 367.147
CNS0095610Silvery flower (tetraploid) 182.663
CNS0095611Silvery flower (tetraploid) 272.715
CNS0095612Silvery flower (tetraploid) 376.594
CNS0095613Golden flower (tetraploid) 144.073
CNS0095614Golden flower (tetraploid) 273.400
CNS0095615Golden flower (tetraploid) 379.011
CRA001975CRR073297Stem 194.187
CRR073298Stem 290.085
CRR073299Stem 379.938
CRR073300Leaf 1108.785
CRR073301Leaf 2100.584
CRR073302Leaf 374.258
CRR073303Juvenile bud 198.002
CRR073304Juvenile bud 274.789
CRR073305Juvenile bud 3140.646
CRR073306Third green 154.882
CRR073307Third green 249.697
CRR073308Third green 366.349
CRR073309Second white 161.878
CRR073310Second white 276.590
CRR073311Second white 383.631
CRR073312Silver flowering 183.979
CRR073313Silver flowering 291.404
CRR073314Silver flowering 373.847
CRR073315Gold flowering 138.752
CRR073316Gold flowering 259.266
CRR073317Gold flowering 343.375
CRR073318Tawny withering 185.981
CRR073319Tawny withering 266.451
CRR073320Tawny withering 394.025