Gene detail

Detail information of GWHGAAZE029559

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657935.1	3.9629E-128	PREDICTED: uncharacterized protein At5g08430-like isoform X4 [Vitis vinifera]
Swissprot	tr\|Q9SD34\|C3H44_ARATH	8E-54	Zinc finger CCCH domain-containing protein 44
trEMBL	tr\|D7TGP5\|D7TGP5_VITVI	2E-128	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29667.3}
TAIR10	AT3G51120.1	4E-44	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	28246978	28249427	-
GWHAAZE00000009	mRNA	28246978	28249427	-
GWHAAZE00000009	exon	28246978	28247874	-
GWHAAZE00000009	exon	28248599	28248786	-
GWHAAZE00000009	exon	28249256	28249427	-
GWHAAZE00000009	CDS	28249256	28249427	-
GWHAAZE00000009	CDS	28248599	28248786	-
GWHAAZE00000009	CDS	28246978	28247874	-

Transcript Sequence
>GWHTAAZE029593 ATGGTGTTTGTATCGGGATTTTGGCCTTGGAATGTTACTGTGGAGTGGGTTTTTTTTTTTTTTTTTTTCCAATGCCTCTTGGTGATTTTCAGGAAGTGCCGAAAATCCTATCATCCTGATTGTGTTGAGAAGGATGATTCATTCCTGGATAATGGAACCCACTGGACGTGTGATTGGCATACTTGCTTCATTTGCCAGAAATCTTCCAAATTTCGATGTTATGTCTGTCCACAAGCTGTGTGTCAGCGCTGCATTAAAGCTGCTGAGTTTGTTCATGTTAGAAAGAAGAAAGGATTCTGCAATAACTGTCTAAAGCTTGCACTTCTTGTGGAAGAAAAGAAGGATATCGACTCTGATGGGGAGAGAGTAGACTTTCAAGATCTGGAAACATTTGAGGGCTTGTTCATGGAATATTGGGAAATAATCAACAAAAAGGAAAATTTCACTGTCGAAGATCTCCGAGCTGCAGATGTCCGGCTGAAGATGGAAAAGAACTACAATCCTCCCGCTGATTTGAAAAGACGTAGAAAAAGTGATGTAGTTGCAGAAATTATTTCTGAAGATGATGATGATGACTTGGATGATATAGAAGAGAACAAGCAACAGCGTAAAAGGAAGAGGACCAAATGGCAAGCATCTCTGATGAAAAGCAAGTTGAAATCAAATAAAAAGGAGTTCGTTGGGTGGGGATCAAAATCTCTCGTACAATTCCTAGAATCTATTGGTAAAAACGCAATCAATAAACTGTCACAACATGATGTTTATAATATTATAAGCGGATACGTCAAGGAAAAAAATCTTTTCCACCCTCAGAAAAAGAAGAAGGTTATATGTGATGCTAGGCTACTGGCCGTTTTAGGGCGGAAAACAGTGAACAAGCACTCAATATATGACCTTCTGGAATCCCATTTCGCTGAGAACCTGGAAAAATCAGAGGATGAGGTTGGTTACATGTCAGAAGAAGATGATGATTGCTTGTTTATCTGTGAAAGGGAGAGGAATTCGAATACCGAGAAAGAATCAAAGAAGAAGGAGGTGGATTTCAATATTCCTCAAATATGTTTTGCAGCCATTGTTGTGAAAAATATCAAACTTGTTTACTTGAAGAGGAGCTTATTACAGGAGCTATCGAAGCAAAATGAGACCTTTGAGAGGAAGGTAATTGGAAGCTTTGTGAGGGTGAAATCAGGTCCCCAGGATTGCATTAAGAAAAGTTATCATCAGCTTGTGCAAGTAACAGGTTGGTGGCCTTGTTGA

Network for GWHGAAZE029559

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02201.19	SWIB	232	304	4.30E-12
PF03126.19	Plus-3	362	414	2.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.507
	SRR3591706	second leaf	0.389
	SRR3591707	mature leaf	0.472
	SRR3591708	Shoot apex	1.756
	SRR3591709	Stem	4.925
	SRR3591710	White floral bud	2.214
	SRR3591711	White flower	1.251
	SRR3591712	Green floral bud	4.243
	SRR3591713	Yellow flower	0.499
SRP173429	SRR8316895	Juvenile bud stage	1.525
	SRR8316896	Juvenile bud stage	3.226
	SRR8316897	Juvenile bud stage	2.159
	SRR8316894	Third green stage	1.547
	SRR8316900	Third green stage	1.627
	SRR8316901	Third green stage	2.015
	SRR8316898	Complete white stage	0.137
	SRR8316899	Complete white stage	0.940
	SRR8316903	Complete white stage	0.329
	SRR8316902	Silver flowering stage	0.058
	SRR8316904	Silver flowering stage	0.055
	SRR8316905	Silver flowering stage	0.072
	SRR8316906	Gold flowering stage	0.334
	SRR8316907	Gold flowering stage	0.554
	SRR8316908	Gold flowering stage	0.567
SRP132670	SRR6706286	Control	0.553
	SRR6706287	Light intensity 50%	0.442
	SRR6706288	Light intensity 20%	0.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.788
	CNS0095593	Slightly white alabastrum(diploid) 2	1.827
	CNS0095594	Slightly white alabastrum(diploid) 3	2.756
	CNS0095595	Whole white alabastrum(diploid) 2	2.186
	CNS0095596	Whole white alabastrum(diploid) 3	2.320
	CNS0095597	Whole white alabastrum(diploid) 4	1.629
	CNS0095598	Silvery flower (diploied) 1	0.969
	CNS0095599	Silvery flower (diploied) 2	1.275
	CNS0095600	Silvery flower (diploied) 3	0.922
	CNS0095601	Golden flower (diploid) 1	1.525
	CNS0095602	Golden flower (diploid) 2	1.456
	CNS0095603	Golden flower (diploid) 3	1.398
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.334
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.602
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.952
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.401
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.284
	CNS0095610	Silvery flower (tetraploid) 1	0.718
	CNS0095611	Silvery flower (tetraploid) 2	1.311
	CNS0095612	Silvery flower (tetraploid) 3	0.609
	CNS0095613	Golden flower (tetraploid) 1	0.218
	CNS0095614	Golden flower (tetraploid) 2	0.603
	CNS0095615	Golden flower (tetraploid) 3	0.165
CRA001975	CRR073297	Stem 1	2.107
	CRR073298	Stem 2	1.199
	CRR073299	Stem 3	0.977
	CRR073300	Leaf 1	0.585
	CRR073301	Leaf 2	0.672
	CRR073302	Leaf 3	0.625
	CRR073303	Juvenile bud 1	0.050
	CRR073304	Juvenile bud 2	0.209
	CRR073305	Juvenile bud 3	0.109
	CRR073306	Third green 1	0.114
	CRR073307	Third green 2	0.088
	CRR073308	Third green 3	0.126
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.027
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.084
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.751
	CRR073319	Tawny withering 2	1.180
	CRR073320	Tawny withering 3	2.061