Gene detail

Detail information of GWHGAAZE029560

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010246145.1	4.3565E-130	PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Nelumbo nucifera]
COG	YP_001504507.1	4E-26	PASTA sensor-containing serine/threonine protein kinase
Swissprot	tr\|Q40541\|NPK1_TOBAC	6E-65	Mitogen-activated protein kinase kinase kinase NPK1
trEMBL	tr\|B9SS78\|B9SS78_RICCO	3E-130	ATP binding protein, putative {ECO:0000313\|EMBL:EEF33521.1}
TAIR10	AT5G55090.1	5E-60	mitogen-activated protein kinase kinase kinase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	28274747	28275706	-
GWHAAZE00000009	mRNA	28274747	28275706	-
GWHAAZE00000009	exon	28274747	28275706	-
GWHAAZE00000009	CDS	28274747	28275706	-

Transcript Sequence
>GWHTAAZE029594 ATGAACAAGGCCAATGGATCATTATTTGTTGTCAAATCCGCAGAATCCGGGGCAGGTCTTCAGTCTCTCGAGAACGAGGCCAACATTCTCGAGAAACTGAACTCCCCCCACATTGTAAAGTCCATGGGAAGGGAGATTTCAAGTGGGCCAAACGGCAGAAAAAGAATCAACCTCTTCATCGAGTACATGGCTGGTGGTAGTCTTGCTGATGTGGCAGAGAAATTTGGGGGCACGCTTGACGAGAGAGTGATTAGATTGTACACTCGCGAGATTCTTTTGGGCTTGAATTATTTACACAAGAATGGAATCGTACACTCAGATCTCAAATGCAAGAATGTGCTTTTGGGTACATTTGGGGATGTAAAATTGGCTGATTTTGGATGTGCGAAGAGGGTAAAGGAGACTAATTCAATTAAATCTTGTACCTCCTTTGGTGGGACCCCATTGTGGATGGCCCCCGAGGTTTTGAGGAACGAACGGTTGGATTTCTCTGCTGATATTTGGTCGTTAGGGTGCACAATTATCGAGATGGCCACCGGAAAACCGCCTTGGGGTGACAAAATTTCAAACCCAATGGCGGCCGTGTTGAAGATTGCTTGTGGAAATGAGGTTCCGGATTTACCCGGGAAATTTTCCAAGGAGGGGTTGGATTTTCTTAAAAAATGCTTGGAGAGGGAACCCAAGAGTAGGTGGACTAGTGAGGAATTACTTAATCACCCGTTTGTTTCCGGGGAATTTGAGGAGGAAGATTCGAGAAAAATTGTTTCTTCTCCAGCAAGCGTGTTAGATGTTGCCGATACTTATTACGAGTCCGAAGAATCTGAAGAATCGCCAAATGGAAGCGATTTTACAATCAGGAATCCGTTTTTGACTAGCCGTAATGCCGAGAAAATGGAAATTTCACAGAGGAAAAGTGAGGTTTTCTTGATGGAATCAGGAAATTGGGTTACTGTAAGATAA

Network for GWHGAAZE029560

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	11	242	1.60E-55

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.059
	SRR3591706	second leaf	0.073
	SRR3591707	mature leaf	0.173
	SRR3591708	Shoot apex	0.518
	SRR3591709	Stem	1.930
	SRR3591710	White floral bud	242.756
	SRR3591711	White flower	9.188
	SRR3591712	Green floral bud	218.796
	SRR3591713	Yellow flower	13.454
SRP173429	SRR8316895	Juvenile bud stage	0.555
	SRR8316896	Juvenile bud stage	11.468
	SRR8316897	Juvenile bud stage	7.788
	SRR8316894	Third green stage	11.799
	SRR8316900	Third green stage	114.516
	SRR8316901	Third green stage	101.260
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	0.405
	SRR8316903	Complete white stage	0.462
	SRR8316902	Silver flowering stage	2.633
	SRR8316904	Silver flowering stage	5.393
	SRR8316905	Silver flowering stage	1.317
	SRR8316906	Gold flowering stage	1.683
	SRR8316907	Gold flowering stage	1.618
	SRR8316908	Gold flowering stage	1.434
SRP132670	SRR6706286	Control	92.244
	SRR6706287	Light intensity 50%	81.765
	SRR6706288	Light intensity 20%	73.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	85.896
	CNS0095593	Slightly white alabastrum(diploid) 2	81.638
	CNS0095594	Slightly white alabastrum(diploid) 3	98.103
	CNS0095595	Whole white alabastrum(diploid) 2	291.544
	CNS0095596	Whole white alabastrum(diploid) 3	345.355
	CNS0095597	Whole white alabastrum(diploid) 4	443.473
	CNS0095598	Silvery flower (diploied) 1	9.872
	CNS0095599	Silvery flower (diploied) 2	31.874
	CNS0095600	Silvery flower (diploied) 3	8.379
	CNS0095601	Golden flower (diploid) 1	8.514
	CNS0095602	Golden flower (diploid) 2	5.920
	CNS0095603	Golden flower (diploid) 3	6.848
	CNS0095604	Slightly white alabastrum(tetraploid) 1	183.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	208.679
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.596
	CNS0095607	Whole white alabastrum(tetraploid) 1	480.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	553.670
	CNS0095609	Whole white alabastrum(tetraploid) 3	209.491
	CNS0095610	Silvery flower (tetraploid) 1	3.911
	CNS0095611	Silvery flower (tetraploid) 2	19.688
	CNS0095612	Silvery flower (tetraploid) 3	47.697
	CNS0095613	Golden flower (tetraploid) 1	5.089
	CNS0095614	Golden flower (tetraploid) 2	2.623
	CNS0095615	Golden flower (tetraploid) 3	30.385
CRA001975	CRR073297	Stem 1	13.297
	CRR073298	Stem 2	16.230
	CRR073299	Stem 3	3.897
	CRR073300	Leaf 1	140.464
	CRR073301	Leaf 2	78.932
	CRR073302	Leaf 3	39.682
	CRR073303	Juvenile bud 1	110.495
	CRR073304	Juvenile bud 2	66.074
	CRR073305	Juvenile bud 3	5.750
	CRR073306	Third green 1	32.303
	CRR073307	Third green 2	33.455
	CRR073308	Third green 3	38.887
	CRR073309	Second white 1	4.294
	CRR073310	Second white 2	15.014
	CRR073311	Second white 3	16.393
	CRR073312	Silver flowering 1	37.929
	CRR073313	Silver flowering 2	32.202
	CRR073314	Silver flowering 3	18.108
	CRR073315	Gold flowering 1	30.633
	CRR073316	Gold flowering 2	10.236
	CRR073317	Gold flowering 3	4.513
	CRR073318	Tawny withering 1	40.481
	CRR073319	Tawny withering 2	36.545
	CRR073320	Tawny withering 3	34.270