Gene detail

Detail information of GWHGAAZE029561

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007041163.1	0	Non-lysosomal glucosylceramidase [Theobroma cacao]
COG	NP_925406.1	2E-133	hypothetical protein gll2460
trEMBL	tr\|A0A061DW00\|A0A061DW00_THECC	0	Non-lysosomal glucosylceramidase {ECO:0000256\|PIRNR:PIRNR028944}
TAIR10	AT5G49900.1	0	Beta-glucosidase, GBA2 type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	28280279	28290129	-
GWHAAZE00000009	mRNA	28280279	28290129	-
GWHAAZE00000009	exon	28280279	28280555	-
GWHAAZE00000009	exon	28280680	28280970	-
GWHAAZE00000009	exon	28281866	28282793	-
GWHAAZE00000009	exon	28283067	28283128	-
GWHAAZE00000009	exon	28283210	28283282	-
GWHAAZE00000009	exon	28283777	28283844	-
GWHAAZE00000009	exon	28283955	28284136	-
GWHAAZE00000009	exon	28285463	28285607	-
GWHAAZE00000009	exon	28285736	28285774	-
GWHAAZE00000009	exon	28285987	28286042	-
GWHAAZE00000009	exon	28286259	28286312	-
GWHAAZE00000009	exon	28286699	28286802	-
GWHAAZE00000009	exon	28286897	28286997	-
GWHAAZE00000009	exon	28287350	28287423	-
GWHAAZE00000009	exon	28287971	28288070	-
GWHAAZE00000009	exon	28288219	28288289	-
GWHAAZE00000009	exon	28288384	28288440	-
GWHAAZE00000009	exon	28289474	28289584	-
GWHAAZE00000009	exon	28290073	28290129	-
GWHAAZE00000009	CDS	28290073	28290129	-
GWHAAZE00000009	CDS	28289474	28289584	-
GWHAAZE00000009	CDS	28288384	28288440	-
GWHAAZE00000009	CDS	28288219	28288289	-
GWHAAZE00000009	CDS	28287971	28288070	-
GWHAAZE00000009	CDS	28287350	28287423	-
GWHAAZE00000009	CDS	28286897	28286997	-
GWHAAZE00000009	CDS	28286699	28286802	-
GWHAAZE00000009	CDS	28286259	28286312	-
GWHAAZE00000009	CDS	28285987	28286042	-
GWHAAZE00000009	CDS	28285736	28285774	-
GWHAAZE00000009	CDS	28285463	28285607	-
GWHAAZE00000009	CDS	28283955	28284136	-
GWHAAZE00000009	CDS	28283777	28283844	-
GWHAAZE00000009	CDS	28283210	28283282	-
GWHAAZE00000009	CDS	28283067	28283128	-
GWHAAZE00000009	CDS	28281866	28282793	-
GWHAAZE00000009	CDS	28280680	28280970	-
GWHAAZE00000009	CDS	28280279	28280555	-

Transcript Sequence
>GWHTAAZE029595 ATGTTGGTTAATGGGTTTGATGGAGATAGGGAGCCTTCTGATTCTTGTAATGATGTGGAAAAGGTTGACCCAGGGAAGCCTCCTTCTCTCACTTGGCAGAGAAAAGTAAATAGTCCGGGAAGTACTCTTTCAGCGTTCAGTCTAAGCGTGAAAGAGATTATCCACATGGCTCCAATAGGTTATCGGATATGGCGTCATCTTCGGGAAGAGGCCGCCAAAGGAAGGGGATCATTTATCAATCCTTTCACAAAGCGTTATGTCTCATCTTGTCATGGTGTTCCCCTGGGTGGTATTGGTGCAGGAAGCATTGGAAGAACTTACAAAGGCGAGTTTTTGCGCTGGCAACTCTTTCCTAGAATTTGTGAAGACAAACCAGTTTTAGCAAATCAATTTTCTGCATTTGTTTCACGCCCAAACGGTGAAAAGTACTCTACTGTGTTATGCCCACAGAACCTCGAAGAGTTGAATAAAGAAAGTTCACCTTCTGGGATAGGATCTTGGGACTGGAAACTTAGTGGGCATAATTCTACGTACCACGCATTGTATCCAAGGGCTTGGACTGTATACGAAGGTGAGCCTGATCCGTCACTGAGAATAGTCTGTCGTCAAATTTCCCCTATTATCCCCAATAATTACAAGGAGAGCAGCTTCCCAGTTGCAGTATTTACTTTCACGCTGTCTAATATGGGAAATACAGCTGCTGATGTCACTTTGCTTTTCACATGGGAGAATTCTGTCGGTGGGGTATCCGGTTTATCTGGCCGTCACTCCAATTCAGAGATTGTGGTGAAGGATGGCATTCATGGTGTATCCCTGCGTCACATGAGTGCCAATGGACTACCCCCAGTAATGTTTGCTATTGCAGCTGAAGCAACGGATGCCGTTCATGTCTCTGAGTGCCCTTGCTTTATTTTATCTGGCAACTCCCAGGGTATCACAGCAAAAGACATGTGGAATGAAATAAAAGAGCATGGATCCTTTGACCGCCTTAATACCGCTGAAATGTCAATGCCTTCAGAACTGGGTTCATCTATTGGGGCAGCCATTGCAGCTTCTGTAACAGTTCCATCAGAGGCAGTGCGTACTGTTACGTTTTCATTGGGGTGGGACTGTCCTGAAGTTAACTTCTCAAGCGGAAAGACTTATTACAGGCGCTACACCAAATTCTATGGTACTCATGGGGACGCCGCAGCAGATATTGCACATGATGCTATTCTTGAGCATGGACTATGGGAGTCCCAAATAGAATCATGGCAGAGACCTATTCTTGAAGACAAGAGGCTTCCTGAATGGTACCCAATCACTCTTTTCAATGAGCTCTACTACCTTAATTCGGGGGGAACAATTTGGACAGATGGATCACCTCCAATTCATCCTTTATCAAGCATTGGAGAAAGAAAGTTCTCCCTTGATAGAGCCAACATAAATCTCAAAACCGTCATTGATAAATCCCTTCAAAACGACACTGCTGTTGATGTTCTTGAACGGATGGCATCAAAACTCGAGGAGATTCACACTCCAACGTCATCAAATTCCGCACTAGGGACAAATCTACTTCAAAAGGGAGAGCAAAACATCGGTCAATTCCTCTATTTCGAAGGAATTGAATACCATATGTGTAACACATACGACGTTCATTTCTACTCTTCTTTTGCCTTAGCCATGCTTTTCCCCAAACTTGAACTCAGCATCCAAAGAGACTTTGCTGCAGCAGTGTTGATGCACGACCCTGGTAAAATGAGTCTTTTACACGACGGAACATTCGTCTCTAGAAAGGTCCTCGGCGCAGTTCCCCATGATATAGGAATGTATGATCCATGGTTCGAAGTAAATTATTACAACCTATACAACACCGACAGGTGGAAAGATCTGAACCCTAAATTTGTTCTCCAAGTTTACAGGGATGTTGTTGCCACGGGTGATAAAAACTTTGCGAAAGCTGTTTGGCCATCTGTTTATGTAGCAATGGCTTATATGGAGCAGTTTGATAAAGATGGGGATGGAATGATTGAAAATGAAGGGTTCCCTGATCAGACGTATGATACATGGTCTGTTAAAGGGGTGAGTGCATATTGCGGTGGCTTGTGGGTAGCGGCTTTGCAGGCTGCGTCAGCTATGGCCGGTGTAATTGGTGATAAGGGTAATGAAGATTACTTTTGGTTTAGGTTTGAGAAAGCTAAGGCTGTATATGAGACGCTGTGGAATGGTTCGTACTTTAACTATGACAACAGTGGTGATACTGCGAGTTCATCTATTCAATCTGATCAGTTGGCTGGACAATGGTATGCCCGAGCGTGTGGTCTTCTACCTATTGTCGATGAAGAAAAAGCAAAAAGTGCACTTGAGAAAATCTATAATTTCAATGTCTTAAAGGTGAAGGGTGGGACGAGGGGGGCTATGAATGGGATGCTGCCAAATGGAGAACCTGACAAGACAAATATGCAGTCACGGGAAATATGGATCGGAGTAACATATGGGGTTGCTGCAGCTATGATTCATGAAGACAAGCAAGAAATGGGATTTCAAACTGCATCTGGAGTCTATGAAGCTGCTTGGTCTAACGAAGGACTCGGGTATTCATTTCAAACTCCAGAGGCTTGGGACATCGAAGGCCAATATAGATCTCTGGGTTACATGCGCCCTTTGGCCATATGGGCAATGCAGTGGGCGTTGTCGCACCCAAAACCTCCCAAGCAAGAAACGAAGCCGGAAATAAAGGAAGAATCTGTGTTGATGCAACACACAGGGTTCAAAAGAGTCGCTCGTCTTCTCAAAATGCCTGAAGAGGAAGGCTCAAGAAGTCTTTTCCAGGTTATTTTCGACTACACTTGTAAAAGAATGTCCATGTGA

Network for GWHGAAZE029561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12215.9	Glyco_hydr_116N	92	411	1.60E-101
PF04685.14	DUF608	527	887	4.40E-156

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17108	GBA2	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0006680	biological_process	glucosylceramide catabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004348	molecular_function	glucosylceramidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.870
	SRR3591706	second leaf	7.504
	SRR3591707	mature leaf	7.102
	SRR3591708	Shoot apex	6.092
	SRR3591709	Stem	8.948
	SRR3591710	White floral bud	17.551
	SRR3591711	White flower	19.726
	SRR3591712	Green floral bud	15.629
	SRR3591713	Yellow flower	21.510
SRP173429	SRR8316895	Juvenile bud stage	9.597
	SRR8316896	Juvenile bud stage	11.983
	SRR8316897	Juvenile bud stage	7.620
	SRR8316894	Third green stage	5.232
	SRR8316900	Third green stage	15.578
	SRR8316901	Third green stage	13.608
	SRR8316898	Complete white stage	10.718
	SRR8316899	Complete white stage	27.048
	SRR8316903	Complete white stage	16.902
	SRR8316902	Silver flowering stage	9.732
	SRR8316904	Silver flowering stage	16.108
	SRR8316905	Silver flowering stage	8.830
	SRR8316906	Gold flowering stage	29.565
	SRR8316907	Gold flowering stage	24.781
	SRR8316908	Gold flowering stage	23.118
SRP132670	SRR6706286	Control	16.804
	SRR6706287	Light intensity 50%	18.880
	SRR6706288	Light intensity 20%	20.478
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.601
	CNS0095593	Slightly white alabastrum(diploid) 2	7.090
	CNS0095594	Slightly white alabastrum(diploid) 3	6.314
	CNS0095595	Whole white alabastrum(diploid) 2	6.646
	CNS0095596	Whole white alabastrum(diploid) 3	6.666
	CNS0095597	Whole white alabastrum(diploid) 4	10.014
	CNS0095598	Silvery flower (diploied) 1	11.411
	CNS0095599	Silvery flower (diploied) 2	11.678
	CNS0095600	Silvery flower (diploied) 3	21.425
	CNS0095601	Golden flower (diploid) 1	10.094
	CNS0095602	Golden flower (diploid) 2	18.522
	CNS0095603	Golden flower (diploid) 3	18.523
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.153
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.493
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.671
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.625
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.942
	CNS0095610	Silvery flower (tetraploid) 1	10.817
	CNS0095611	Silvery flower (tetraploid) 2	12.915
	CNS0095612	Silvery flower (tetraploid) 3	13.808
	CNS0095613	Golden flower (tetraploid) 1	6.306
	CNS0095614	Golden flower (tetraploid) 2	8.413
	CNS0095615	Golden flower (tetraploid) 3	7.416
CRA001975	CRR073297	Stem 1	12.441
	CRR073298	Stem 2	11.101
	CRR073299	Stem 3	9.928
	CRR073300	Leaf 1	16.615
	CRR073301	Leaf 2	13.065
	CRR073302	Leaf 3	13.088
	CRR073303	Juvenile bud 1	14.350
	CRR073304	Juvenile bud 2	18.488
	CRR073305	Juvenile bud 3	20.511
	CRR073306	Third green 1	11.907
	CRR073307	Third green 2	7.159
	CRR073308	Third green 3	9.546
	CRR073309	Second white 1	10.492
	CRR073310	Second white 2	10.005
	CRR073311	Second white 3	10.410
	CRR073312	Silver flowering 1	11.341
	CRR073313	Silver flowering 2	5.793
	CRR073314	Silver flowering 3	9.640
	CRR073315	Gold flowering 1	5.806
	CRR073316	Gold flowering 2	11.822
	CRR073317	Gold flowering 3	7.375
	CRR073318	Tawny withering 1	8.165
	CRR073319	Tawny withering 2	7.730
	CRR073320	Tawny withering 3	5.323