Detail information of GWHGAAZE029598


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010490204.15.58937E-32PREDICTED: ras-related protein RABA2a isoform X1 [Camelina sativa]
COGYP_007670739.10.000004Ras family protein
Swissprottr|O04486|RAA2A_ARATH6E-34Ras-related protein RABA2a (Precursor)
trEMBLtr|D7KJS4|D7KJS4_ARALL4E-32Putative uncharacterized protein {ECO:0000313|EMBL:EFH68773.1}
TAIR10AT1G09630.14E-28RAB GTPase 11C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2971106329711450-
GWHAAZE00000009mRNA2971106329711450-
GWHAAZE00000009exon2971106329711358-
GWHAAZE00000009exon2971143829711450-
GWHAAZE00000009CDS2971143829711450-
GWHAAZE00000009CDS2971106329711358-
Transcript Sequence

Network for GWHGAAZE029598

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras40825.30E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE029598.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180200220Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf89.953
SRR3591706second leaf40.361
SRR3591707mature leaf21.804
SRR3591708Shoot apex44.142
SRR3591709Stem57.841
SRR3591710White floral bud43.217
SRR3591711White flower44.499
SRR3591712Green floral bud55.566
SRR3591713Yellow flower37.078
SRP173429 SRR8316895Juvenile bud stage 37.084
SRR8316896Juvenile bud stage 43.500
SRR8316897Juvenile bud stage 18.714
SRR8316894Third green stage 21.303
SRR8316900Third green stage 66.878
SRR8316901Third green stage 65.616
SRR8316898Complete white stage 35.777
SRR8316899Complete white stage 70.926
SRR8316903Complete white stage 49.103
SRR8316902Silver flowering stage28.028
SRR8316904Silver flowering stage37.349
SRR8316905Silver flowering stage19.481
SRR8316906Gold flowering stage 62.755
SRR8316907Gold flowering stage 58.939
SRR8316908Gold flowering stage 46.655
SRP132670SRR6706286Control193.105
SRR6706287Light intensity 50%191.342
SRR6706288Light intensity 20%206.058
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.359
CNS0095593Slightly white alabastrum(diploid) 257.859
CNS0095594Slightly white alabastrum(diploid) 343.618
CNS0095595Whole white alabastrum(diploid) 242.201
CNS0095596Whole white alabastrum(diploid) 343.231
CNS0095597Whole white alabastrum(diploid) 444.956
CNS0095598Silvery flower (diploied) 138.085
CNS0095599Silvery flower (diploied) 228.775
CNS0095600Silvery flower (diploied) 348.434
CNS0095601Golden flower (diploid) 131.786
CNS0095602Golden flower (diploid) 243.983
CNS0095603Golden flower (diploid) 343.242
CNS0095604Slightly white alabastrum(tetraploid) 149.344
CNS0095605Slightly white alabastrum(tetraploid) 234.131
CNS0095606Slightly white alabastrum(tetraploid) 3106.199
CNS0095607Whole white alabastrum(tetraploid) 134.080
CNS0095608Whole white alabastrum(tetraploid) 234.787
CNS0095609Whole white alabastrum(tetraploid) 371.958
CNS0095610Silvery flower (tetraploid) 169.968
CNS0095611Silvery flower (tetraploid) 243.037
CNS0095612Silvery flower (tetraploid) 347.175
CNS0095613Golden flower (tetraploid) 150.177
CNS0095614Golden flower (tetraploid) 264.346
CNS0095615Golden flower (tetraploid) 322.457
CRA001975CRR073297Stem 171.879
CRR073298Stem 270.586
CRR073299Stem 361.011
CRR073300Leaf 178.628
CRR073301Leaf 280.045
CRR073302Leaf 364.863
CRR073303Juvenile bud 164.063
CRR073304Juvenile bud 274.065
CRR073305Juvenile bud 366.561
CRR073306Third green 172.336
CRR073307Third green 271.662
CRR073308Third green 362.167
CRR073309Second white 134.140
CRR073310Second white 222.507
CRR073311Second white 315.386
CRR073312Silver flowering 122.181
CRR073313Silver flowering 221.842
CRR073314Silver flowering 317.963
CRR073315Gold flowering 137.286
CRR073316Gold flowering 256.489
CRR073317Gold flowering 324.503
CRR073318Tawny withering 174.253
CRR073319Tawny withering 260.970
CRR073320Tawny withering 370.033