Gene detail

Detail information of GWHGAAZE029605

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011047893.1	3.1186E-127	PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
Swissprot	tr\|Q39019\|KSG10_ARATH	3E-107	Shaggy-related protein kinase kappa
trEMBL	tr\|A0A068TN06\|A0A068TN06_COFCA	1E-125	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97626.1}
TAIR10	AT1G57870.2	3E-74	shaggy-like kinase 42

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	29799646	29801344	+
GWHAAZE00000009	mRNA	29799646	29801344	+
GWHAAZE00000009	exon	29799646	29799801	+
GWHAAZE00000009	exon	29800475	29800567	+
GWHAAZE00000009	exon	29800685	29800744	+
GWHAAZE00000009	exon	29801042	29801344	+
GWHAAZE00000009	CDS	29799646	29799801	+
GWHAAZE00000009	CDS	29800475	29800567	+
GWHAAZE00000009	CDS	29800685	29800744	+
GWHAAZE00000009	CDS	29801042	29801344	+

Transcript Sequence
>GWHTAAZE029639 ATGTCTATGGCGTCGGCCAGCCTAGGACATGGGGGAGTGGGCAGTTCCAGGTCTGTTAATGGCTTCAATGAGTCATCATCCAGTTCAGTTGACTGGCTAGGAAGAGAGATGCTTGAGATGAGATTGAGGGACAAGGTGGACCACGATGATGACAGGGACAGTGAGCCAGATATAGTTAATGGTGTGGGAACTGAAGCAGGACATGTTATAAGAACGACTATTGGTGGTCGAAATGGTCAAGCTAAGCAGGTTATCAGTTATATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTCGTTTTCCAAGCAAAATGCAGAGAGACTGGAGAGATTGTGGCTATCAAGAAGGTTCTTCAAGACAAGCGGTACAAGAATAGGGAGTTACAGATAATGCAAAAGTTGGACCATCCTAATATTGTTGCTCTTAAGCATTCTTTCTTTTCAACAACCGATAAGGAAGAGATATACCTCAATCTTGTTCTCGAGTTTGTTCCGGAAACTGTTAATCGTATGGCGAGAAACTACAGCAGGATGAACCAGAGGATGCCGTTAATTTATGTCAAACTTTATACCTATCAGGCATGTAGTTATCTGCTTTCCGTTCTTTGA

Network for GWHGAAZE029605

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0155

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	89	194	1.30E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_GSK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	89.708
	SRR3591706	second leaf	146.451
	SRR3591707	mature leaf	196.232
	SRR3591708	Shoot apex	70.318
	SRR3591709	Stem	236.706
	SRR3591710	White floral bud	85.870
	SRR3591711	White flower	47.386
	SRR3591712	Green floral bud	112.500
	SRR3591713	Yellow flower	41.563
SRP173429	SRR8316895	Juvenile bud stage	55.076
	SRR8316896	Juvenile bud stage	56.713
	SRR8316897	Juvenile bud stage	19.082
	SRR8316894	Third green stage	27.108
	SRR8316900	Third green stage	146.083
	SRR8316901	Third green stage	140.231
	SRR8316898	Complete white stage	74.547
	SRR8316899	Complete white stage	284.691
	SRR8316903	Complete white stage	99.050
	SRR8316902	Silver flowering stage	14.426
	SRR8316904	Silver flowering stage	18.552
	SRR8316905	Silver flowering stage	8.516
	SRR8316906	Gold flowering stage	19.447
	SRR8316907	Gold flowering stage	21.713
	SRR8316908	Gold flowering stage	22.578
SRP132670	SRR6706286	Control	143.867
	SRR6706287	Light intensity 50%	179.952
	SRR6706288	Light intensity 20%	215.475
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.203
	CNS0095593	Slightly white alabastrum(diploid) 2	38.820
	CNS0095594	Slightly white alabastrum(diploid) 3	28.135
	CNS0095595	Whole white alabastrum(diploid) 2	55.920
	CNS0095596	Whole white alabastrum(diploid) 3	55.532
	CNS0095597	Whole white alabastrum(diploid) 4	65.167
	CNS0095598	Silvery flower (diploied) 1	85.395
	CNS0095599	Silvery flower (diploied) 2	53.994
	CNS0095600	Silvery flower (diploied) 3	70.119
	CNS0095601	Golden flower (diploid) 1	52.650
	CNS0095602	Golden flower (diploid) 2	76.072
	CNS0095603	Golden flower (diploid) 3	75.567
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.740
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.616
	CNS0095606	Slightly white alabastrum(tetraploid) 3	131.645
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.993
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	220.527
	CNS0095610	Silvery flower (tetraploid) 1	101.304
	CNS0095611	Silvery flower (tetraploid) 2	109.969
	CNS0095612	Silvery flower (tetraploid) 3	29.441
	CNS0095613	Golden flower (tetraploid) 1	40.922
	CNS0095614	Golden flower (tetraploid) 2	82.469
	CNS0095615	Golden flower (tetraploid) 3	20.374
CRA001975	CRR073297	Stem 1	54.647
	CRR073298	Stem 2	52.948
	CRR073299	Stem 3	40.116
	CRR073300	Leaf 1	173.406
	CRR073301	Leaf 2	118.935
	CRR073302	Leaf 3	93.323
	CRR073303	Juvenile bud 1	134.310
	CRR073304	Juvenile bud 2	163.630
	CRR073305	Juvenile bud 3	134.274
	CRR073306	Third green 1	41.952
	CRR073307	Third green 2	31.389
	CRR073308	Third green 3	30.004
	CRR073309	Second white 1	5.911
	CRR073310	Second white 2	4.284
	CRR073311	Second white 3	2.733
	CRR073312	Silver flowering 1	1.983
	CRR073313	Silver flowering 2	1.042
	CRR073314	Silver flowering 3	0.935
	CRR073315	Gold flowering 1	45.802
	CRR073316	Gold flowering 2	72.281
	CRR073317	Gold flowering 3	48.209
	CRR073318	Tawny withering 1	44.801
	CRR073319	Tawny withering 2	38.415
	CRR073320	Tawny withering 3	59.881