Gene detail

Detail information of GWHGAAZE029611

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009603651.1	0	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Nicotiana tomentosiformis]
COG	YP_004775215.1	2E-54	RHS repeat-associated core domain-containing protein
Swissprot	tr\|O65440\|BAME3_ARATH	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (Precursor)
trEMBL	tr\|K4B1S8\|K4B1S8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g103530.2.1}
TAIR10	AT4G20270.1	3E-174	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	29875496	29880518	+
GWHAAZE00000009	mRNA	29875496	29880518	+
GWHAAZE00000009	exon	29875496	29877593	+
GWHAAZE00000009	exon	29880082	29880518	+
GWHAAZE00000009	CDS	29875496	29877593	+
GWHAAZE00000009	CDS	29880082	29880518	+

Transcript Sequence
>GWHTAAZE029645 ATGAAAGTTTCCCAAGAGAATATGGCAGTTTCTTTCATTGTTCTAGCACTCTTCTCCCTTGTTGGTTCCTCCGTTTCATCCTCTCTCATTAATGATTTCCATGCCTTGATTACTCTCAAACAAGGATTTGAATTCCCTCCCCCAGCCTTAAACACATGGAATTCGTTGAATTCGAGCTCAATTTGTTCATGGGATGGAATCAAATGCTTCAACGGGAGAGTAATTTCTCTTGATTTGTCCAATATGAATCTATATGGCTCTGTTTCCCCTGTTGTTTCAAGTCTAGATAAACTTCTTGAGCTCTCTCTAGGTGGAAACAATTTCACCGGTGAGTTAAAGATCGAGAATTTAAGTAATCTTCGATATTTAAACGTATCGAACAATCTATTCAGTGGGGATTTGGATTGGAACTACTCAAGTTTGGCTAATTTGGAAGTGTTTGATGCTTACAACAACAACTTCACAGCTCCCCTGCCTGTTTGGTTAGTGAGAATCAAGAAACTCAAGCACTTAGACTTGGGAGGAAACTTTTTCTATGGCGAAATCCCAGAAAGTTATGGGGATTTGAATTCCTTGGAGTACTTGTCTCTGGCGGGAAATGATCTTCATGGGAAAATCCCAGGTGAGTTGGGGAATCTAACTAAATTGAGAGAGATTTACTTGGGTTATTACAATGTGTTTGAAGGTGGTATTCCAAGGGTGTTTGGTAACTTGGTTAATCTTGTCCACATGGATATCTCATCCTGTGAATTGGATGGGCCAATTCCTGCAGAGCTAGGGAAATTGAAGTCAATTGACACTATTTACTTGCACATCAATTCCCTTTCTGGTCCAATTCCAAAGGAATTAGGCAACTTAACAAGCTTGGTGAATCTTGATCTTTCTGCCAATTCACTTTCTGGGGAAATCCCATTTGAGCTTACTAATCTCAAACAAATAAAGCTTTTGAACCTATTCATGAATAGGTTACACGGGTCAATACCGGATTTTATCGCAGACTTTCCTTATTTGGAAAGTCTTGGGCTTTGGATGAACAACTTTACAGGGGTGATTCCGGCCACTCTTGGCCAGAATTTGAAGCTCCAAGAGCTTGATTTGTCATCCAATAAGCTCACCGGAACAATACCACATGGCATTTGTGCTTCGAATCAGCTCAAAATCTTGATTTTGCTCAAGAATTTTCTCCTTGGACCGATCCCGGATGAATTAGGGACCTGTTCAAGCCTTGTTAGAGTGAGACTAGGGGAGAATTATTTGAATGGAACCATTCCAAATGGATTCATTTACTTGCCTAATCTCAATTTAGTTGAGTTGCAAAACAATTTCTTATCCGGAACTCTTTCCGAAAATAGAAATTCTTCGTTGAAACCAACTGAATTAGTCCAAATGAATCTATCAAACAATCAACTTTCGGGTTCTTTACCATTTTCCCTTGCAAATTTCCTTTCCCTCCAAATCCTTTTACTCAGCGGAAACAAATTATCTGGCCTAATTCCTACCTTCATCAGTGAACTCCACCAAGTACTAAAGCTTGACCTTAGTGGGAATTCGTTTTCCGGGGAAATCCCACTGGAAATTTCTACTTGTTACCATCTCACTTACCTAGACTTGAGCCGTAATCGCCTCTTTGGCTCGATCCCAATCCAAGTTTCCCAGCTTCGAATCTTGAATTACTTGAACCTATCAAGAAACCATTTAAATGAGACTATACCCAAATCAATCGGCTTGATGAAAAGCCTAACTATAGCCGATTTTTCCTTCAACGATTTCTCCGGAGAATTGCCCGAAATAGGCCAATTTGCGTTCTTTAACGCCTCCTCATTCGCGGGTAATCCTCAGTTATGTGGATCTTTTTTGAACAATCCTTGCAGTGCATCTCTAATCACAAACAAAGCCAAGAATCCCCATTCAATCTTCAAGATAATCTTCGCATTAGGACTAATAATTTGCTCACTAATCCTCGCGGCTTTAGCTATATACAAGGCCAAATCATTCAAGAAAACTTCGGAGTCTTGGAAAATGACTGCGTTCCAAAAGGTTGGGTTCACTGTTTACGAGGTCCTCGATAGCATCAAAGATGGCAATGTGATAGGCCGAGAATACGCATACACTTTAAGGGTGGACGAAAAGAGTGACGTGTACAGTTTTGGAGTTGTACTCTTGGAGCTTATTACTGGGCGACGTCCGGTGGGTGATTTTGGAGAAGGCGTGGATATTGTGCAGTGGACAAGAAGAGCAACTAACTGCCACAAAGAAGAAATCAATTGCATCCTTGATCCAAGGCTGACAGTTGTACCACAAGATGAAGCAATCCACTTGTTCTTCATTGCAATGTCATGCACACAAGATAACAGCATCGAACGGCCAACCATGAGAGAAGTGGTTCAAATGTTGTCCGAATTTCCTCGCTCCTCCTCTAAATATCAATCCTCATCCTCTTCAGTTGTCTTTCAACAATCGAAAAACTTTGAAAAAGAGAGAACTTGCACGAAGATTCGACAAGATACCTACGAGTTGAGAAGCTTGAAATTTTAG

Network for GWHGAAZE029611

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	69	6.90E-09
PF00560.34	LRR_1	167	185	1.5
PF13855.7	LRR_8	335	391	2.30E-06
PF07714.18	PK_Tyr_Ser-Thr	704	798	4.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.440
	SRR3591706	second leaf	2.556
	SRR3591707	mature leaf	3.461
	SRR3591708	Shoot apex	5.679
	SRR3591709	Stem	4.624
	SRR3591710	White floral bud	0.785
	SRR3591711	White flower	0.964
	SRR3591712	Green floral bud	2.641
	SRR3591713	Yellow flower	0.120
SRP173429	SRR8316895	Juvenile bud stage	1.200
	SRR8316896	Juvenile bud stage	1.119
	SRR8316897	Juvenile bud stage	0.847
	SRR8316894	Third green stage	0.465
	SRR8316900	Third green stage	1.177
	SRR8316901	Third green stage	0.914
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.174
	SRR8316903	Complete white stage	0.146
	SRR8316902	Silver flowering stage	0.034
	SRR8316904	Silver flowering stage	0.027
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.104
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.206
	SRR6706287	Light intensity 50%	0.369
	SRR6706288	Light intensity 20%	0.488
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.908
	CNS0095593	Slightly white alabastrum(diploid) 2	0.754
	CNS0095594	Slightly white alabastrum(diploid) 3	1.656
	CNS0095595	Whole white alabastrum(diploid) 2	0.819
	CNS0095596	Whole white alabastrum(diploid) 3	0.813
	CNS0095597	Whole white alabastrum(diploid) 4	0.870
	CNS0095598	Silvery flower (diploied) 1	0.848
	CNS0095599	Silvery flower (diploied) 2	0.088
	CNS0095600	Silvery flower (diploied) 3	0.421
	CNS0095601	Golden flower (diploid) 1	0.899
	CNS0095602	Golden flower (diploid) 2	0.927
	CNS0095603	Golden flower (diploid) 3	0.936
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.238
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.458
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.548
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.239
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.965
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.719
	CNS0095610	Silvery flower (tetraploid) 1	0.181
	CNS0095611	Silvery flower (tetraploid) 2	0.656
	CNS0095612	Silvery flower (tetraploid) 3	0.284
	CNS0095613	Golden flower (tetraploid) 1	0.185
	CNS0095614	Golden flower (tetraploid) 2	0.161
	CNS0095615	Golden flower (tetraploid) 3	0.228
CRA001975	CRR073297	Stem 1	1.523
	CRR073298	Stem 2	1.184
	CRR073299	Stem 3	2.088
	CRR073300	Leaf 1	0.733
	CRR073301	Leaf 2	0.520
	CRR073302	Leaf 3	0.278
	CRR073303	Juvenile bud 1	0.488
	CRR073304	Juvenile bud 2	0.108
	CRR073305	Juvenile bud 3	1.319
	CRR073306	Third green 1	0.200
	CRR073307	Third green 2	0.126
	CRR073308	Third green 3	0.164
	CRR073309	Second white 1	0.048
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.021
	CRR073314	Silver flowering 3	0.201
	CRR073315	Gold flowering 1	0.642
	CRR073316	Gold flowering 2	0.936
	CRR073317	Gold flowering 3	1.892
	CRR073318	Tawny withering 1	2.907
	CRR073319	Tawny withering 2	1.412
	CRR073320	Tawny withering 3	2.636