Detail information of GWHGAAZE029636


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002530674.10endomembrane protein emp70, putative [Ricinus communis]
Swissprottr|Q940G0|TMN1_ARATH0Transmembrane 9 superfamily member 1 {ECO:0000305} (Precursor)
trEMBLtr|B9SXF5|B9SXF5_RICCO0Endomembrane protein emp70, putative {ECO:0000313|EMBL:EEF31705.1}
TAIR10AT1G10950.10transmembrane nine 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3029501430303412-
GWHAAZE00000009mRNA3029501430303412-
GWHAAZE00000009exon3029501430295081-
GWHAAZE00000009exon3029563530295908-
GWHAAZE00000009exon3029677630297149-
GWHAAZE00000009exon3029755630297650-
GWHAAZE00000009exon3029880430298970-
GWHAAZE00000009exon3029905530299189-
GWHAAZE00000009exon3029968730299839-
GWHAAZE00000009exon3029993130300064-
GWHAAZE00000009exon3030013830300155-
GWHAAZE00000009exon3030099430301098-
GWHAAZE00000009exon3030119030301382-
GWHAAZE00000009exon3030331730303412-
GWHAAZE00000009CDS3030331730303412-
GWHAAZE00000009CDS3030119030301382-
GWHAAZE00000009CDS3030099430301098-
GWHAAZE00000009CDS3030013830300155-
GWHAAZE00000009CDS3029993130300064-
GWHAAZE00000009CDS3029968730299839-
GWHAAZE00000009CDS3029905530299189-
GWHAAZE00000009CDS3029880430298970-
GWHAAZE00000009CDS3029755630297650-
GWHAAZE00000009CDS3029677630297149-
GWHAAZE00000009CDS3029563530295908-
GWHAAZE00000009CDS3029501430295081-
Transcript Sequence

Network for GWHGAAZE029636

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0186


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02990.17EMP70565602.50E-167
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf88.629
SRR3591706second leaf57.291
SRR3591707mature leaf37.551
SRR3591708Shoot apex62.539
SRR3591709Stem65.618
SRR3591710White floral bud69.494
SRR3591711White flower64.020
SRR3591712Green floral bud84.117
SRR3591713Yellow flower53.927
SRP173429 SRR8316895Juvenile bud stage 41.782
SRR8316896Juvenile bud stage 57.767
SRR8316897Juvenile bud stage 29.490
SRR8316894Third green stage 24.716
SRR8316900Third green stage 83.343
SRR8316901Third green stage 69.453
SRR8316898Complete white stage 27.014
SRR8316899Complete white stage 72.588
SRR8316903Complete white stage 52.067
SRR8316902Silver flowering stage29.253
SRR8316904Silver flowering stage45.290
SRR8316905Silver flowering stage19.601
SRR8316906Gold flowering stage 48.795
SRR8316907Gold flowering stage 49.787
SRR8316908Gold flowering stage 58.010
SRP132670SRR6706286Control55.293
SRR6706287Light intensity 50%56.322
SRR6706288Light intensity 20%59.952
CNP0000432CNS0095592Slightly white alabastrum(diploid) 146.643
CNS0095593Slightly white alabastrum(diploid) 243.826
CNS0095594Slightly white alabastrum(diploid) 343.140
CNS0095595Whole white alabastrum(diploid) 252.959
CNS0095596Whole white alabastrum(diploid) 358.012
CNS0095597Whole white alabastrum(diploid) 453.852
CNS0095598Silvery flower (diploied) 138.479
CNS0095599Silvery flower (diploied) 234.631
CNS0095600Silvery flower (diploied) 370.927
CNS0095601Golden flower (diploid) 131.195
CNS0095602Golden flower (diploid) 267.013
CNS0095603Golden flower (diploid) 363.374
CNS0095604Slightly white alabastrum(tetraploid) 160.656
CNS0095605Slightly white alabastrum(tetraploid) 252.241
CNS0095606Slightly white alabastrum(tetraploid) 388.039
CNS0095607Whole white alabastrum(tetraploid) 155.322
CNS0095608Whole white alabastrum(tetraploid) 259.361
CNS0095609Whole white alabastrum(tetraploid) 376.729
CNS0095610Silvery flower (tetraploid) 154.870
CNS0095611Silvery flower (tetraploid) 255.058
CNS0095612Silvery flower (tetraploid) 351.365
CNS0095613Golden flower (tetraploid) 125.083
CNS0095614Golden flower (tetraploid) 245.596
CNS0095615Golden flower (tetraploid) 339.508
CRA001975CRR073297Stem 146.182
CRR073298Stem 243.575
CRR073299Stem 343.871
CRR073300Leaf 154.459
CRR073301Leaf 252.553
CRR073302Leaf 349.167
CRR073303Juvenile bud 156.488
CRR073304Juvenile bud 243.114
CRR073305Juvenile bud 358.799
CRR073306Third green 135.088
CRR073307Third green 227.808
CRR073308Third green 331.859
CRR073309Second white 134.164
CRR073310Second white 230.496
CRR073311Second white 332.142
CRR073312Silver flowering 129.662
CRR073313Silver flowering 230.633
CRR073314Silver flowering 331.344
CRR073315Gold flowering 116.327
CRR073316Gold flowering 228.234
CRR073317Gold flowering 325.748
CRR073318Tawny withering 148.111
CRR073319Tawny withering 240.374
CRR073320Tawny withering 352.535