Gene detail

Detail information of GWHGAAZE029654

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006359119.1	6.1474E-151	PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial-like [Solanum tuberosum]
COG	YP_004178663.1	1E-71	6-phosphogluconate dehydrogenase
Swissprot	tr\|Q949M8\|3HID3_ARATH	7E-105	Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial
trEMBL	tr\|M1D2M8\|M1D2M8_SOLTU	3E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400079888}
TAIR10	AT1G71180.1	2E-85	6-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	30531581	30533080	-
GWHAAZE00000009	mRNA	30531581	30533080	-
GWHAAZE00000009	exon	30531581	30532089	-
GWHAAZE00000009	exon	30532732	30533080	-
GWHAAZE00000009	CDS	30532732	30533080	-
GWHAAZE00000009	CDS	30531581	30532089	-

Transcript Sequence
>GWHTAAZE029688 ATGGGCTCCGCCATGGCCACCCGCCTCCTCGCCGCCGGCTACTCTCTCACCCTCTACGCCCGCACCCCTTCCAAATCCCTCCACCTCCAATCTCTCGGCGCCCGTCTCGCCGATTCCCCTGCTGATGTAGCCAGAACAAGTGATGTTGTCTTCACCATGCTGGGACACCCATCAGACGTTCGACAAATTGTCTTGGAGAACCCAAATAGCATCCTTTCTGGCCTAAATCCTGGAAGTGTCGTTGTTGACCACACCAGCAGTCACCCGGATCTGGCGAAACGGATATTTGATGCTGCCCGGGAGAGGAAGTGCTGGGCGGTGGACGCACCGGTGTCTGGTGGAGATATAGGGGCAAGAGATGGCAAATTAGCCATTTTGGCTGGTGGAGATGGGGGCGTGGTGAAGTGGCTATCGCCATTGTTCAATGAAATGGGGAGGCCAACTCATGTGGGTGGTCCTGGCTGTGGGCAGAGCTGCAAGATTGCCAACCAAATCACCGTTGGGGCGAATTTGGTTGGGCTGAGCGAAGGGCTTGTTTTTGCAGAGCGGGCGGGGCTGGATTTGGGGCAGTTCTTGGAGGCGGTGAGGGGTGGGGCTGCAGGGTCAATGGCGATGGAGTTGTGGGGGGAAAGGATCATAAATAGGGACTTTAAGGCTGGTGGGTTTGCGGAGTATATGGTAAAGGATTTGGGGATGGGGGTTGATTTTGTGGAGGAGGAGGAGGGTGGTGCTAAAGCGGTGGTATTGCCCGGTGCTGCATTGTCTAAGCAGTTGTTCTCTGGGATGGTTGCTAATGGTGATGGGAAGCTTGGTACTCAGGGTCTTATTACTGTCATAGAAAGAATCAATGGCAAGTGA

Network for GWHGAAZE029654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03446.16	NAD_binding_2	1	148	2.40E-36
PF14833.7	NAD_binding_11	154	277	1.40E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00020	HIBADH, mmsB	Metabolic pathways	map01100
K00020	HIBADH, mmsB	Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050661	molecular_function	NADP binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.885
	SRR3591706	second leaf	3.377
	SRR3591707	mature leaf	3.509
	SRR3591708	Shoot apex	4.526
	SRR3591709	Stem	4.733
	SRR3591710	White floral bud	6.442
	SRR3591711	White flower	6.231
	SRR3591712	Green floral bud	10.254
	SRR3591713	Yellow flower	9.662
SRP173429	SRR8316895	Juvenile bud stage	4.825
	SRR8316896	Juvenile bud stage	9.563
	SRR8316897	Juvenile bud stage	6.516
	SRR8316894	Third green stage	4.052
	SRR8316900	Third green stage	10.217
	SRR8316901	Third green stage	10.251
	SRR8316898	Complete white stage	3.191
	SRR8316899	Complete white stage	9.291
	SRR8316903	Complete white stage	4.369
	SRR8316902	Silver flowering stage	5.240
	SRR8316904	Silver flowering stage	4.328
	SRR8316905	Silver flowering stage	3.337
	SRR8316906	Gold flowering stage	20.817
	SRR8316907	Gold flowering stage	13.265
	SRR8316908	Gold flowering stage	14.288
SRP132670	SRR6706286	Control	12.541
	SRR6706287	Light intensity 50%	11.470
	SRR6706288	Light intensity 20%	11.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.306
	CNS0095593	Slightly white alabastrum(diploid) 2	12.585
	CNS0095594	Slightly white alabastrum(diploid) 3	13.523
	CNS0095595	Whole white alabastrum(diploid) 2	10.020
	CNS0095596	Whole white alabastrum(diploid) 3	12.329
	CNS0095597	Whole white alabastrum(diploid) 4	11.076
	CNS0095598	Silvery flower (diploied) 1	9.536
	CNS0095599	Silvery flower (diploied) 2	6.781
	CNS0095600	Silvery flower (diploied) 3	16.776
	CNS0095601	Golden flower (diploid) 1	16.322
	CNS0095602	Golden flower (diploid) 2	23.272
	CNS0095603	Golden flower (diploid) 3	23.041
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.105
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.883
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.768
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.931
	CNS0095610	Silvery flower (tetraploid) 1	12.185
	CNS0095611	Silvery flower (tetraploid) 2	9.787
	CNS0095612	Silvery flower (tetraploid) 3	7.103
	CNS0095613	Golden flower (tetraploid) 1	11.307
	CNS0095614	Golden flower (tetraploid) 2	19.550
	CNS0095615	Golden flower (tetraploid) 3	12.681
CRA001975	CRR073297	Stem 1	9.637
	CRR073298	Stem 2	11.286
	CRR073299	Stem 3	14.173
	CRR073300	Leaf 1	11.025
	CRR073301	Leaf 2	10.933
	CRR073302	Leaf 3	15.574
	CRR073303	Juvenile bud 1	14.113
	CRR073304	Juvenile bud 2	12.102
	CRR073305	Juvenile bud 3	12.223
	CRR073306	Third green 1	2.333
	CRR073307	Third green 2	2.370
	CRR073308	Third green 3	2.184
	CRR073309	Second white 1	4.494
	CRR073310	Second white 2	3.006
	CRR073311	Second white 3	2.501
	CRR073312	Silver flowering 1	4.689
	CRR073313	Silver flowering 2	5.760
	CRR073314	Silver flowering 3	6.712
	CRR073315	Gold flowering 1	2.065
	CRR073316	Gold flowering 2	4.097
	CRR073317	Gold flowering 3	6.014
	CRR073318	Tawny withering 1	10.720
	CRR073319	Tawny withering 2	5.636
	CRR073320	Tawny withering 3	5.970