Gene detail

Detail information of GWHGAAZE029658

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008218794.1	0	PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 7-like [Prunus mume]
COG	NP_809660.1	9E-31	phosphatidylinositol-4-phosphate 5-kinase
Swissprot	tr\|Q8RY89\|PI5K8_ARATH	0	Phosphatidylinositol 4-phosphate 5-kinase 8
trEMBL	tr\|M5XK42\|M5XK42_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26442.1}
TAIR10	AT1G60890.1	0	Phosphatidylinositol-4-phosphate 5-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	30594135	30598749	+
GWHAAZE00000009	mRNA	30594135	30598749	+
GWHAAZE00000009	exon	30594135	30595225	+
GWHAAZE00000009	exon	30595388	30595555	+
GWHAAZE00000009	exon	30596681	30596846	+
GWHAAZE00000009	exon	30596942	30597052	+
GWHAAZE00000009	exon	30597149	30597336	+
GWHAAZE00000009	exon	30597663	30597817	+
GWHAAZE00000009	exon	30598577	30598749	+
GWHAAZE00000009	CDS	30594135	30595225	+
GWHAAZE00000009	CDS	30595388	30595555	+
GWHAAZE00000009	CDS	30596681	30596846	+
GWHAAZE00000009	CDS	30596942	30597052	+
GWHAAZE00000009	CDS	30597149	30597336	+
GWHAAZE00000009	CDS	30597663	30597817	+
GWHAAZE00000009	CDS	30598577	30598749	+

Transcript Sequence
>GWHTAAZE029692 ATGTGCTTTCATACATTTGATGACATTTTATTTGGTGTGGAACTTGCTTATATTTTCAGCATTAGTGAGAAGATCTTATCAAATGGAGATGTGTATCTTGGTACTTTCAAGGGAATGCTTCCTCATGGAAGGGGTAAATATACTTGGTCAGACGGGATGGTTTACGAGGGTGACTGGGAAGAAGGAAAAATGAGTGGCAAAGGACGTGTTCTCTGGTCATCAGGAGCAACATACGATGGGGATTTTTCCGGAGGATACCTTCACGGTGTTGGCACCTACACAGGTCTGGATGGGGACGTATACAGCGGCTCTTGGAGATTGAATATTCAACACGGACTTGGAAGAAAGGAGTATCGAAATTCAGATAATTACGATGGTTCATGGAAAGAAGGAATACATGAAGGCAGTGGCCGATATGCTTGGAGTAATGGCAATATGTACATCGGGAATTGGAAAGCTGGGAAAATGTGTGGTAGAGGGGTTATGAAATGGTTTAATGGTGATCTTTTTGATGGGTCTTGGCTGAATGGCCTTATGCATGGATCAGGGTTTTACAGGTTTGCAGACGGAAGTTACTATTTTGGGATGTGGACTAAGGGCCTAAAGGATGGACAAGGAACATTTTATCCTGCTGGTAGTAAACATCCATCTCTAAGGAGGCGGTGTGACTCTGAATCTCATAGTTCTTCTGTGAAGTACGAGGAGCCAAATGCTATAAAACCTAATGTTAAGAGGAATCTATCGGAGAAGATCTCTATGAATGGATTCTTAAGAGGGTCAGGTCGAATATCACATAAGAGTTCATCACTAGAAGATTCTGTTAGAGAGGTTTCATCTTCTGAAACTGCATGCATGTTATCTCATACATTGGGTGAAGGTCAAAGTGAGGTGCAGGATGATAGCACTGTCGCTTATGAAAGGGAATATGTACAAGGAATTTTGATCAAAGAAAGGATTAGAAATAGTGAAGGACTATCGCACAAAAAAAAGCAGCGAGTTAAATTTCAAGGGAAAGATTCAAAAAAGACGCCATGTGTGGACAGCCATAATAATAGCTATTTTCTGATGCTTAATCTGCAACTTGGTATCAGGTACACCGTTGGCAAGATCACACCAGTGCCTATGCGTGAAGTGCGATCTTCTGATTTTGGAGAACGAGCTAGAATAAGAATGTTTTTTCCTAGAAAGGGCTCCCAGTTTACACCTCCACATTATTCGGTAGATTTCTATTGGAAGGACTACTGCCCGATGGTGTTTAGGAATTTGAGGGAAATGTTTAAGTTAGATGCTGCGGATTATATGATGTCCATCTGCGGTGATGATGGCCTGCGAGAGCTTTCTTCTCCAGGGAAAAGTGGCAGCCTTTTCTATCTCTCTCATGACGATAGATTTGTGATTAAGACTTTAAGAAAATCCGAGCTGAAGGTTTTACTCAGGATGCTTCCTAGCTATTATCATCACGTAAAAGAGCATGAAAACACTCTCATAACAAAGTTTTTTGGGCTCCACCGTATAACATTGAAGGGTGGAAAAAAGGTTCGCTTTGTTGTCATGGGGAATATGTTTTGCACTGAGCTGCGAATACATCGTCGTTATGATTTGAAGGGTTCATGTCAAGGAAGATTTACAGATAAAGATGTTATAGATGAGGCTACCACATTGAAAGACCTTGATTTGTCATATGAATTTCATATGGATAGATCATTGCGTGAAGCACTTTTTAAACAAATATCTCTAGACTGCATGTTCTTAGAATCTCAAGATATACTTGACTATAGCCTTCTATTGGGACTGCATTTTAGTGCTCCTGAACACCTGAATGCTCTCTTAGAGCCGCCCAACACACTGCAGAAGCCTGACAGTGTACCCTCGGATGATGGTTCTATCTCTCAAAGCGATATCCTGATTCCTCCCAAGGGTCTTCTCCTAGTGACCCATGAACCTAGTTCTGTGAGCACTGCACCGGGCCCTCACATTCGAGGAAATACCTTGAGAGCATTTTCCGTAGGTGACAAGGAAGTTGATCTTCTTCTGCCTGGTACTGGAAGGTAA

Network for GWHGAAZE029658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02493.21	MORN	32	53	0.0027
PF02493.21	MORN	55	76	0.00026
PF02493.21	MORN	78	100	0.0049
PF02493.21	MORN	101	121	0.091
PF02493.21	MORN	124	146	0.00043
PF02493.21	MORN	147	168	7.30E-06
PF02493.21	MORN	170	191	3.40E-06
PF02493.21	MORN	193	213	0.035
PF01504.19	PIP5K	441	616	6.50E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00889	PIP5K	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		MAPK signaling pathway - yeast	map04011
		Phosphatidylinositol signaling system	map04070
		Phospholipase D signaling pathway	map04072
		Endocytosis	map04144
		Mitophagy - yeast	map04139
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016308	molecular_function	1-phosphatidylinositol-4-phosphate 5-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.238
	SRR3591706	second leaf	25.807
	SRR3591707	mature leaf	41.913
	SRR3591708	Shoot apex	33.254
	SRR3591709	Stem	40.791
	SRR3591710	White floral bud	32.518
	SRR3591711	White flower	32.364
	SRR3591712	Green floral bud	29.400
	SRR3591713	Yellow flower	17.481
SRP173429	SRR8316895	Juvenile bud stage	18.131
	SRR8316896	Juvenile bud stage	22.835
	SRR8316897	Juvenile bud stage	10.341
	SRR8316894	Third green stage	11.487
	SRR8316900	Third green stage	26.133
	SRR8316901	Third green stage	25.228
	SRR8316898	Complete white stage	9.620
	SRR8316899	Complete white stage	47.994
	SRR8316903	Complete white stage	21.286
	SRR8316902	Silver flowering stage	10.045
	SRR8316904	Silver flowering stage	13.660
	SRR8316905	Silver flowering stage	6.315
	SRR8316906	Gold flowering stage	20.788
	SRR8316907	Gold flowering stage	17.484
	SRR8316908	Gold flowering stage	21.770
SRP132670	SRR6706286	Control	22.539
	SRR6706287	Light intensity 50%	25.671
	SRR6706288	Light intensity 20%	26.278
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.905
	CNS0095593	Slightly white alabastrum(diploid) 2	14.914
	CNS0095594	Slightly white alabastrum(diploid) 3	12.541
	CNS0095595	Whole white alabastrum(diploid) 2	13.392
	CNS0095596	Whole white alabastrum(diploid) 3	7.383
	CNS0095597	Whole white alabastrum(diploid) 4	10.854
	CNS0095598	Silvery flower (diploied) 1	22.708
	CNS0095599	Silvery flower (diploied) 2	16.089
	CNS0095600	Silvery flower (diploied) 3	22.890
	CNS0095601	Golden flower (diploid) 1	16.128
	CNS0095602	Golden flower (diploid) 2	24.257
	CNS0095603	Golden flower (diploid) 3	23.300
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.483
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.046
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.509
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.822
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.683
	CNS0095610	Silvery flower (tetraploid) 1	18.365
	CNS0095611	Silvery flower (tetraploid) 2	20.543
	CNS0095612	Silvery flower (tetraploid) 3	13.152
	CNS0095613	Golden flower (tetraploid) 1	7.360
	CNS0095614	Golden flower (tetraploid) 2	16.567
	CNS0095615	Golden flower (tetraploid) 3	12.250
CRA001975	CRR073297	Stem 1	11.831
	CRR073298	Stem 2	11.410
	CRR073299	Stem 3	9.288
	CRR073300	Leaf 1	16.165
	CRR073301	Leaf 2	12.744
	CRR073302	Leaf 3	9.820
	CRR073303	Juvenile bud 1	11.593
	CRR073304	Juvenile bud 2	8.497
	CRR073305	Juvenile bud 3	14.732
	CRR073306	Third green 1	4.539
	CRR073307	Third green 2	3.869
	CRR073308	Third green 3	5.018
	CRR073309	Second white 1	3.330
	CRR073310	Second white 2	3.941
	CRR073311	Second white 3	4.988
	CRR073312	Silver flowering 1	1.887
	CRR073313	Silver flowering 2	2.354
	CRR073314	Silver flowering 3	1.530
	CRR073315	Gold flowering 1	5.634
	CRR073316	Gold flowering 2	10.547
	CRR073317	Gold flowering 3	6.173
	CRR073318	Tawny withering 1	12.102
	CRR073319	Tawny withering 2	13.703
	CRR073320	Tawny withering 3	12.600