Detail information of GWHGAAZE029664


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97539.13.72047E-83unnamed protein product [Coffea canephora]
Swissprottr|Q8LPN7|RNG1L_ARATH6E-27E3 ubiquitin-protein ligase RING1-like
trEMBLtr|A0A068TNL0|A0A068TNL0_COFCA1E-83Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97539.1}
TAIR10AT1G60360.11E-28RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3067634830677747-
GWHAAZE00000009mRNA3067634830677747-
GWHAAZE00000009exon3067634830676843-
GWHAAZE00000009exon3067741630677747-
GWHAAZE00000009CDS3067741630677747-
GWHAAZE00000009CDS3067634830676843-
Transcript Sequence

Network for GWHGAAZE029664

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21752173.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.380
SRR3591706second leaf1.108
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.303
SRR3591709Stem3.910
SRR3591710White floral bud1.243
SRR3591711White flower1.891
SRR3591712Green floral bud2.342
SRR3591713Yellow flower0.213
SRP173429 SRR8316895Juvenile bud stage 0.330
SRR8316896Juvenile bud stage 0.209
SRR8316897Juvenile bud stage 0.374
SRR8316894Third green stage 0.552
SRR8316900Third green stage 0.862
SRR8316901Third green stage 2.150
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.732
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.962
SRR6706287Light intensity 50%0.669
SRR6706288Light intensity 20%0.644
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.625
CNS0095593Slightly white alabastrum(diploid) 24.762
CNS0095594Slightly white alabastrum(diploid) 31.305
CNS0095595Whole white alabastrum(diploid) 20.528
CNS0095596Whole white alabastrum(diploid) 30.994
CNS0095597Whole white alabastrum(diploid) 40.341
CNS0095598Silvery flower (diploied) 10.003
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.002
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.045
CNS0095603Golden flower (diploid) 30.018
CNS0095604Slightly white alabastrum(tetraploid) 11.608
CNS0095605Slightly white alabastrum(tetraploid) 22.200
CNS0095606Slightly white alabastrum(tetraploid) 32.520
CNS0095607Whole white alabastrum(tetraploid) 10.723
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.511
CNS0095610Silvery flower (tetraploid) 10.077
CNS0095611Silvery flower (tetraploid) 20.219
CNS0095612Silvery flower (tetraploid) 30.161
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.061
CNS0095615Golden flower (tetraploid) 30.060
CRA001975CRR073297Stem 10.340
CRR073298Stem 20.731
CRR073299Stem 30.208
CRR073300Leaf 12.094
CRR073301Leaf 21.709
CRR073302Leaf 30.941
CRR073303Juvenile bud 10.052
CRR073304Juvenile bud 20.059
CRR073305Juvenile bud 30.430
CRR073306Third green 10.062
CRR073307Third green 20.000
CRR073308Third green 30.328
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 12.269
CRR073319Tawny withering 20.885
CRR073320Tawny withering 30.587