Detail information of GWHGAAZE029673


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97525.11.00506E-49unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TMF4|A0A068TMF4_COFCA4E-50Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97525.1}
TAIR10AT1G11400.31E-15partner of Y14-MAGO

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3083919430840807+
GWHAAZE00000009mRNA3083919430840807+
GWHAAZE00000009exon3083919430839271+
GWHAAZE00000009exon3083962530839849+
GWHAAZE00000009exon3084067030840807+
GWHAAZE00000009CDS3083919430839271+
GWHAAZE00000009CDS3083962530839849+
GWHAAZE00000009CDS3084067030840807+
Transcript Sequence

Network for GWHGAAZE029673

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14294WIBG, PYM RNA transport map03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.123
SRR3591706second leaf10.574
SRR3591707mature leaf8.810
SRR3591708Shoot apex9.208
SRR3591709Stem8.462
SRR3591710White floral bud10.470
SRR3591711White flower12.758
SRR3591712Green floral bud8.990
SRR3591713Yellow flower5.896
SRP173429 SRR8316895Juvenile bud stage 5.244
SRR8316896Juvenile bud stage 5.713
SRR8316897Juvenile bud stage 2.065
SRR8316894Third green stage 2.350
SRR8316900Third green stage 5.949
SRR8316901Third green stage 5.071
SRR8316898Complete white stage 2.197
SRR8316899Complete white stage 8.639
SRR8316903Complete white stage 5.699
SRR8316902Silver flowering stage2.867
SRR8316904Silver flowering stage2.332
SRR8316905Silver flowering stage1.154
SRR8316906Gold flowering stage 2.691
SRR8316907Gold flowering stage 2.128
SRR8316908Gold flowering stage 3.370
SRP132670SRR6706286Control3.795
SRR6706287Light intensity 50%3.468
SRR6706288Light intensity 20%4.386
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.334
CNS0095593Slightly white alabastrum(diploid) 25.648
CNS0095594Slightly white alabastrum(diploid) 34.112
CNS0095595Whole white alabastrum(diploid) 22.835
CNS0095596Whole white alabastrum(diploid) 32.276
CNS0095597Whole white alabastrum(diploid) 42.479
CNS0095598Silvery flower (diploied) 19.125
CNS0095599Silvery flower (diploied) 213.784
CNS0095600Silvery flower (diploied) 33.811
CNS0095601Golden flower (diploid) 15.040
CNS0095602Golden flower (diploid) 25.450
CNS0095603Golden flower (diploid) 36.878
CNS0095604Slightly white alabastrum(tetraploid) 12.964
CNS0095605Slightly white alabastrum(tetraploid) 21.835
CNS0095606Slightly white alabastrum(tetraploid) 33.184
CNS0095607Whole white alabastrum(tetraploid) 11.429
CNS0095608Whole white alabastrum(tetraploid) 20.276
CNS0095609Whole white alabastrum(tetraploid) 31.982
CNS0095610Silvery flower (tetraploid) 11.628
CNS0095611Silvery flower (tetraploid) 22.527
CNS0095612Silvery flower (tetraploid) 32.017
CNS0095613Golden flower (tetraploid) 11.670
CNS0095614Golden flower (tetraploid) 23.001
CNS0095615Golden flower (tetraploid) 31.496
CRA001975CRR073297Stem 15.043
CRR073298Stem 24.636
CRR073299Stem 33.674
CRR073300Leaf 13.072
CRR073301Leaf 22.597
CRR073302Leaf 34.817
CRR073303Juvenile bud 13.192
CRR073304Juvenile bud 23.476
CRR073305Juvenile bud 32.990
CRR073306Third green 10.328
CRR073307Third green 20.472
CRR073308Third green 30.882
CRR073309Second white 11.042
CRR073310Second white 20.414
CRR073311Second white 30.292
CRR073312Silver flowering 10.080
CRR073313Silver flowering 20.270
CRR073314Silver flowering 30.018
CRR073315Gold flowering 19.331
CRR073316Gold flowering 214.812
CRR073317Gold flowering 38.577
CRR073318Tawny withering 16.287
CRR073319Tawny withering 29.658
CRR073320Tawny withering 38.431