Detail information of GWHGAAZE029679


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009589721.10PREDICTED: WD-40 repeat-containing protein MSI1 [Nicotiana tomentosiformis]
Swissprottr|O22466|MSI1_SOLLC0WD-40 repeat-containing protein MSI1
trEMBLtr|B0LUS9|B0LUS9_TOBAC0Multicopy suppressor of IRA1 {ECO:0000313|EMBL:ABY84675.1}
TAIR10AT5G58230.10Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3099488631006930-
GWHAAZE00000009mRNA3099488631006930-
GWHAAZE00000009exon3099488630995307-
GWHAAZE00000009exon3099563530995736-
GWHAAZE00000009exon3099617130996286-
GWHAAZE00000009exon3099892830999080-
GWHAAZE00000009exon3100483731005163-
GWHAAZE00000009exon3100658631006930-
GWHAAZE00000009CDS3100658631006930-
GWHAAZE00000009CDS3100483731005163-
GWHAAZE00000009CDS3099892830999080-
GWHAAZE00000009CDS3099617130996286-
GWHAAZE00000009CDS3099563530995736-
GWHAAZE00000009CDS3099507030995307-
GWHAAZE00000009three_prime_UTR3099488630995069-
Transcript Sequence

Network for GWHGAAZE029679

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12265.9CAF1C_H4-bd19882.70E-28
PF00400.33WD402202560.097
PF00400.33WD403664010.0015
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K10752RBBP4, HAT2, CAF1, MIS16 Cellular senescence map04218

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.476
SRR3591706second leaf9.325
SRR3591707mature leaf8.813
SRR3591708Shoot apex21.925
SRR3591709Stem16.964
SRR3591710White floral bud15.158
SRR3591711White flower18.295
SRR3591712Green floral bud17.811
SRR3591713Yellow flower13.869
SRP173429 SRR8316895Juvenile bud stage 8.918
SRR8316896Juvenile bud stage 15.681
SRR8316897Juvenile bud stage 4.726
SRR8316894Third green stage 6.236
SRR8316900Third green stage 15.824
SRR8316901Third green stage 16.732
SRR8316898Complete white stage 5.699
SRR8316899Complete white stage 22.411
SRR8316903Complete white stage 7.082
SRR8316902Silver flowering stage4.363
SRR8316904Silver flowering stage7.066
SRR8316905Silver flowering stage2.412
SRR8316906Gold flowering stage 10.161
SRR8316907Gold flowering stage 11.383
SRR8316908Gold flowering stage 10.136
SRP132670SRR6706286Control13.783
SRR6706287Light intensity 50%15.515
SRR6706288Light intensity 20%16.582
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.467
CNS0095593Slightly white alabastrum(diploid) 214.560
CNS0095594Slightly white alabastrum(diploid) 312.152
CNS0095595Whole white alabastrum(diploid) 211.285
CNS0095596Whole white alabastrum(diploid) 313.508
CNS0095597Whole white alabastrum(diploid) 410.739
CNS0095598Silvery flower (diploied) 110.808
CNS0095599Silvery flower (diploied) 29.529
CNS0095600Silvery flower (diploied) 312.231
CNS0095601Golden flower (diploid) 18.305
CNS0095602Golden flower (diploid) 210.216
CNS0095603Golden flower (diploid) 311.338
CNS0095604Slightly white alabastrum(tetraploid) 113.315
CNS0095605Slightly white alabastrum(tetraploid) 211.070
CNS0095606Slightly white alabastrum(tetraploid) 321.451
CNS0095607Whole white alabastrum(tetraploid) 19.346
CNS0095608Whole white alabastrum(tetraploid) 210.045
CNS0095609Whole white alabastrum(tetraploid) 316.191
CNS0095610Silvery flower (tetraploid) 114.029
CNS0095611Silvery flower (tetraploid) 212.549
CNS0095612Silvery flower (tetraploid) 311.209
CNS0095613Golden flower (tetraploid) 19.808
CNS0095614Golden flower (tetraploid) 210.501
CNS0095615Golden flower (tetraploid) 37.798
CRA001975CRR073297Stem 116.280
CRR073298Stem 214.763
CRR073299Stem 317.511
CRR073300Leaf 118.766
CRR073301Leaf 219.076
CRR073302Leaf 318.329
CRR073303Juvenile bud 121.926
CRR073304Juvenile bud 214.991
CRR073305Juvenile bud 321.149
CRR073306Third green 16.714
CRR073307Third green 26.584
CRR073308Third green 36.082
CRR073309Second white 16.706
CRR073310Second white 27.507
CRR073311Second white 37.477
CRR073312Silver flowering 16.337
CRR073313Silver flowering 27.950
CRR073314Silver flowering 34.246
CRR073315Gold flowering 110.808
CRR073316Gold flowering 211.879
CRR073317Gold flowering 311.573
CRR073318Tawny withering 114.113
CRR073319Tawny withering 211.688
CRR073320Tawny withering 315.631