Gene detail

Detail information of GWHGAAZE029690

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092380.1	7.7143E-156	PREDICTED: WD-40 repeat-containing protein MSI1 [Sesamum indicum]
COG	NP_487506.1	7E-13	hypothetical protein alr3466
Swissprot	tr\|O22466\|MSI1_SOLLC	6E-155	WD-40 repeat-containing protein MSI1
trEMBL	tr\|M1C6W9\|M1C6W9_SOLTU	1E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400061016}
TAIR10	AT5G58230.1	4E-116	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	31175440	31180224	-
GWHAAZE00000009	mRNA	31175440	31180224	-
GWHAAZE00000009	exon	31180108	31180224	-
GWHAAZE00000009	exon	31178868	31179020	-
GWHAAZE00000009	exon	31177173	31177297	-
GWHAAZE00000009	exon	31176913	31177008	-
GWHAAZE00000009	exon	31175440	31175677	-
GWHAAZE00000009	CDS	31180108	31180224	-
GWHAAZE00000009	CDS	31178868	31179020	-
GWHAAZE00000009	CDS	31177173	31177297	-
GWHAAZE00000009	CDS	31176913	31177008	-
GWHAAZE00000009	CDS	31175440	31175677	-

Transcript Sequence
>GWHTAAZE029724 ATGGAGTCAATTCAAGCAAGGCACTTGTTAAGTGGTTCTGATGATGCCCAAATATGCTTGTGGGACATTAATGCTACTCCAAAGAAAAAGTCCGTTGATGCAATGCAGATATTTAAGGTTCATAAAGGTGTTGTAGAAGATGTAGCATGGCACCTGAGGCACGAATATTTGTTTGGTTCAGTTGGGGATGATCAATTTCTGCATATATGGGATCTCAGAACTCCATCTGTGACCAAGCCTATTCAAAGCGTAGTTGCTCATCAAAGTGAGGTTAACTGCTTATTATTTAATCCTTTTAATGAATGGGTTGTGGCGACGGGGTTCACCGATAAGACTGTTAAGTTATTCGATATACGCAAAATCTCAACTGCTCTCCATACCTTTGATTGCCACAAAGAGGAGGTTTTCCAAGTTGGGTGGAATCCGAAGAATGAGACCATCTTAGCTTCTTGTTGCCTTGGTAGAAGACTAATGGTTTGGGACCTTAGTAGGATCGACGAAGAACAGACTCCAGAGGATGCCGAAGACGGCCCACCGGAGCTGCTATTTATACACGGGGGTCACACTAGTAAAATATCGGACTTCTCTTGGAACCCGTGCAAAGATTGGGTGGTGGCTAGTGTAGCCGAAGATAACATTCTCCAAATATGGCAAATGGCAAATAAAATATACAATGATGAGGATGATCTACCCCCACCAGCAGCAGATGAACCCACTAAAGGTTCTTAG

Network for GWHGAAZE029690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	35	71	0.044
PF00400.33	WD40	79	117	4.50E-06
PF00400.33	WD40	125	161	0.23
PF00400.33	WD40	182	217	0.00035

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10752	RBBP4, HAT2, CAF1, MIS16	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.038
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.017
	SRR8316896	Juvenile bud stage	0.010
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.069
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.024
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.058
	SRR8316902	Silver flowering stage	0.010
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.021
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.018
	SRR6706287	Light intensity 50%	0.006
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.351
	CNS0095595	Whole white alabastrum(diploid) 2	0.029
	CNS0095596	Whole white alabastrum(diploid) 3	0.096
	CNS0095597	Whole white alabastrum(diploid) 4	0.027
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.024
	CNS0095601	Golden flower (diploid) 1	0.034
	CNS0095602	Golden flower (diploid) 2	0.013
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.468
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.194
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.007
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.076
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.727
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.698
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.076
	CNS0095612	Silvery flower (tetraploid) 3	0.008
	CNS0095613	Golden flower (tetraploid) 1	0.032
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.064
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.006
	CRR073300	Leaf 1	0.019
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.024
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.018
	CRR073305	Juvenile bud 3	0.009
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.030
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.032
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.048
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.026
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.031
	CRR073317	Gold flowering 3	0.094
	CRR073318	Tawny withering 1	0.155
	CRR073319	Tawny withering 2	0.042
	CRR073320	Tawny withering 3	0.091