Gene detail

Detail information of GWHGAAZE029696

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087796.1	0	PREDICTED: pinin [Sesamum indicum]
trEMBL	tr\|A0A068TNI1\|A0A068TNI1_COFCA	3E-169	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97514.1}
TAIR10	AT1G15200.1	2E-85	protein-protein interaction regulator family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	31279039	31284522	+
GWHAAZE00000009	mRNA	31279039	31284522	+
GWHAAZE00000009	exon	31279039	31279122	+
GWHAAZE00000009	exon	31279412	31279477	+
GWHAAZE00000009	exon	31279977	31280141	+
GWHAAZE00000009	exon	31280247	31280360	+
GWHAAZE00000009	exon	31282044	31282115	+
GWHAAZE00000009	exon	31282819	31282902	+
GWHAAZE00000009	exon	31283009	31283109	+
GWHAAZE00000009	exon	31283647	31283731	+
GWHAAZE00000009	exon	31283929	31284522	+
GWHAAZE00000009	CDS	31279039	31279122	+
GWHAAZE00000009	CDS	31279412	31279477	+
GWHAAZE00000009	CDS	31279977	31280141	+
GWHAAZE00000009	CDS	31280247	31280360	+
GWHAAZE00000009	CDS	31282044	31282115	+
GWHAAZE00000009	CDS	31282819	31282902	+
GWHAAZE00000009	CDS	31283009	31283109	+
GWHAAZE00000009	CDS	31283647	31283731	+
GWHAAZE00000009	CDS	31283929	31284333	+
GWHAAZE00000009	three_prime_UTR	31284334	31284522	+

Transcript Sequence
>GWHTAAZE029730 ATGGGAAGCAGCGGCGGCGTAGTGGAGAAGACAGAGGAAGAGCTCCGCAAAGAGATCGATGAGTTACATCGTCAACAATGGGAGGCTGAAAAGACCGACTTAGAAGACCAACCTGCTCCTAAAAGGCGACTCTCTTCGGCTGTTGTCAAGATTGAGGATGGGGAGATAATTGAGGATGCCACCGAGGCTGTGAAGATTGTGAGAAATAAGGATTCAAGTGTGGAAGAAAGCGTTGGGGGTGTCACTGCAAACCGGAGTGAGAGCAAGCCATCCAATTGGTCTAGGAGGGATGGGTCTTCGAGACCAGCTAAGATTGATTCTGAAATTCCTCCGGCAGTGCAAGTTCCTAGGGTATTGCCAAAAGATGAGGATCCCAACTTGGTTAAAAGGAATAAGAGAATGCTTGGACAGCTACTGGGTACATTGGAGAAATTCAGGAAAGATGACGTCAAACTTTCTGGTACAGAGGCATACATGCGGAGGTCGGATTCTTTAAAAAGAGCTGAGGAAAAAGCACGTGAAGAAAGTGAAAGGCTGAGGCAGCAGGAGCGTGAACAAATTGCTGAGAAGCGGAGGAGAGATTTGTCTCTTAGGGCACGTGTTGCTGCTAAGGCAGAGGAGAAGAAGTTGGAGCTGCTATTTCTTCGGTGGAGTGAGCACCAGAGAAAACTTGGCAATTTTATAAGGACTAAGGCAGAACCTCGAATATATTACTCATTTGCCAAACCAATGGACGAAGATGCTGAATTAGTTGAACAGCGGAAAGAGCAGATATTCCAAGAATGGAAGACTGCAAGGAGAGAGGAACTGTCTGAATATCAGAAGCAGATCAGTGTGCAATATGTTGCCAATGTTGAAAAGGAGCTGGAGAGGTGGCAAAATGCTAGGAAAGCGAGGAATACAAACAACAATATGATGAACTTACAAGAGACAATGGACAAAGAACTGGAAACGCATAGGCTTGAGCATGGTCCCAAGCCCCGTAAGATCCCCGGTGGAGGCAATGAAGAAGACGAGGAGGAGGACGATGTGGAAGATATAACCGTGGGAGAGGACGACATGATGGATGATGTGTTGGATGTTGACAACGAGAATGGTCGGAGGGGCGACGAGACGGTGAAGCTGGAAGCTAGTAATAATGGTGGAAGTCCACAAGCAGATAGTAAGGTTCACTAAGTTCCATCTGTCATGTAAGTTGAGTTTATATGATAATTGATAGTAATGTTGATTTTCGGTATGAACCCTTTTTTCTTTTTTCATTTTTTGCTTATTGAAGTTTCAATTGTTGTATTGGCATAGTTTTGTTTGTGGGAATGAGGAATGCTAAATTATATTTGAGTTGTTGCTACGTTGGATTTGTTTATA

Network for GWHGAAZE029696

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0193
CFinderModule0245

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04696.14	Pinin_SDK_memA	128	255	1.80E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13114	PNN	RNA transport	map03013
K13114	PNN	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.875
	SRR3591706	second leaf	37.437
	SRR3591707	mature leaf	27.862
	SRR3591708	Shoot apex	67.830
	SRR3591709	Stem	63.132
	SRR3591710	White floral bud	47.377
	SRR3591711	White flower	48.901
	SRR3591712	Green floral bud	51.361
	SRR3591713	Yellow flower	35.527
SRP173429	SRR8316895	Juvenile bud stage	57.691
	SRR8316896	Juvenile bud stage	95.037
	SRR8316897	Juvenile bud stage	48.246
	SRR8316894	Third green stage	35.833
	SRR8316900	Third green stage	73.970
	SRR8316901	Third green stage	83.674
	SRR8316898	Complete white stage	26.109
	SRR8316899	Complete white stage	81.066
	SRR8316903	Complete white stage	62.657
	SRR8316902	Silver flowering stage	36.335
	SRR8316904	Silver flowering stage	46.875
	SRR8316905	Silver flowering stage	22.427
	SRR8316906	Gold flowering stage	68.950
	SRR8316907	Gold flowering stage	75.011
	SRR8316908	Gold flowering stage	81.856
SRP132670	SRR6706286	Control	79.293
	SRR6706287	Light intensity 50%	83.013
	SRR6706288	Light intensity 20%	77.907
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	99.156
	CNS0095593	Slightly white alabastrum(diploid) 2	86.357
	CNS0095594	Slightly white alabastrum(diploid) 3	84.702
	CNS0095595	Whole white alabastrum(diploid) 2	63.573
	CNS0095596	Whole white alabastrum(diploid) 3	52.524
	CNS0095597	Whole white alabastrum(diploid) 4	58.377
	CNS0095598	Silvery flower (diploied) 1	78.925
	CNS0095599	Silvery flower (diploied) 2	68.759
	CNS0095600	Silvery flower (diploied) 3	26.279
	CNS0095601	Golden flower (diploid) 1	68.294
	CNS0095602	Golden flower (diploid) 2	30.015
	CNS0095603	Golden flower (diploid) 3	30.562
	CNS0095604	Slightly white alabastrum(tetraploid) 1	81.624
	CNS0095605	Slightly white alabastrum(tetraploid) 2	79.354
	CNS0095606	Slightly white alabastrum(tetraploid) 3	100.768
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.234
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.277
	CNS0095609	Whole white alabastrum(tetraploid) 3	60.587
	CNS0095610	Silvery flower (tetraploid) 1	69.727
	CNS0095611	Silvery flower (tetraploid) 2	32.097
	CNS0095612	Silvery flower (tetraploid) 3	40.445
	CNS0095613	Golden flower (tetraploid) 1	44.999
	CNS0095614	Golden flower (tetraploid) 2	51.846
	CNS0095615	Golden flower (tetraploid) 3	25.780
CRA001975	CRR073297	Stem 1	110.174
	CRR073298	Stem 2	97.560
	CRR073299	Stem 3	48.611
	CRR073300	Leaf 1	104.701
	CRR073301	Leaf 2	106.598
	CRR073302	Leaf 3	44.724
	CRR073303	Juvenile bud 1	44.252
	CRR073304	Juvenile bud 2	26.616
	CRR073305	Juvenile bud 3	45.883
	CRR073306	Third green 1	12.456
	CRR073307	Third green 2	11.107
	CRR073308	Third green 3	13.816
	CRR073309	Second white 1	10.774
	CRR073310	Second white 2	13.480
	CRR073311	Second white 3	12.402
	CRR073312	Silver flowering 1	9.306
	CRR073313	Silver flowering 2	11.348
	CRR073314	Silver flowering 3	10.255
	CRR073315	Gold flowering 1	11.537
	CRR073316	Gold flowering 2	19.700
	CRR073317	Gold flowering 3	8.692
	CRR073318	Tawny withering 1	43.441
	CRR073319	Tawny withering 2	53.963
	CRR073320	Tawny withering 3	37.471