Detail information of GWHGAAZE029703


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006597337.10PREDICTED: tubby-like F-box protein 8-like isoform X1 [Glycine max]
Swissprottr|Q9FRH7|TLP10_ARATH0Tubby-like F-box protein 10
trEMBLtr|I1MDS7|I1MDS7_SOYBN0Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}
TAIR10AT1G25280.13E-174tubby like protein 10

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3135721931362539-
GWHAAZE00000009mRNA3135721931362539-
GWHAAZE00000009exon3136241231362539-
GWHAAZE00000009exon3136107531361506-
GWHAAZE00000009exon3136042231360509-
GWHAAZE00000009exon3135941231359544-
GWHAAZE00000009exon3135721931357960-
GWHAAZE00000009five_prime_UTR3136241231362539-
GWHAAZE00000009five_prime_UTR3136142631361506-
GWHAAZE00000009CDS3136107531361425-
GWHAAZE00000009CDS3136042231360509-
GWHAAZE00000009CDS3135941231359544-
GWHAAZE00000009CDS3135721931357960-
Transcript Sequence

Network for GWHGAAZE029703

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box531043.50E-10
PF01167.19Tub1174321.50E-116
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.421
SRR3591706second leaf9.579
SRR3591707mature leaf8.052
SRR3591708Shoot apex16.417
SRR3591709Stem12.074
SRR3591710White floral bud8.630
SRR3591711White flower10.567
SRR3591712Green floral bud10.321
SRR3591713Yellow flower6.763
SRP173429 SRR8316895Juvenile bud stage 3.380
SRR8316896Juvenile bud stage 7.149
SRR8316897Juvenile bud stage 1.803
SRR8316894Third green stage 2.493
SRR8316900Third green stage 6.784
SRR8316901Third green stage 5.702
SRR8316898Complete white stage 1.968
SRR8316899Complete white stage 9.740
SRR8316903Complete white stage 3.123
SRR8316902Silver flowering stage1.652
SRR8316904Silver flowering stage2.260
SRR8316905Silver flowering stage1.014
SRR8316906Gold flowering stage 7.053
SRR8316907Gold flowering stage 5.587
SRR8316908Gold flowering stage 6.843
SRP132670SRR6706286Control7.538
SRR6706287Light intensity 50%6.716
SRR6706288Light intensity 20%5.341
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.371
CNS0095593Slightly white alabastrum(diploid) 25.764
CNS0095594Slightly white alabastrum(diploid) 35.120
CNS0095595Whole white alabastrum(diploid) 23.131
CNS0095596Whole white alabastrum(diploid) 32.654
CNS0095597Whole white alabastrum(diploid) 42.750
CNS0095598Silvery flower (diploied) 17.945
CNS0095599Silvery flower (diploied) 25.168
CNS0095600Silvery flower (diploied) 35.255
CNS0095601Golden flower (diploid) 16.857
CNS0095602Golden flower (diploid) 27.696
CNS0095603Golden flower (diploid) 38.081
CNS0095604Slightly white alabastrum(tetraploid) 110.478
CNS0095605Slightly white alabastrum(tetraploid) 27.712
CNS0095606Slightly white alabastrum(tetraploid) 317.820
CNS0095607Whole white alabastrum(tetraploid) 15.080
CNS0095608Whole white alabastrum(tetraploid) 22.663
CNS0095609Whole white alabastrum(tetraploid) 35.696
CNS0095610Silvery flower (tetraploid) 16.055
CNS0095611Silvery flower (tetraploid) 26.796
CNS0095612Silvery flower (tetraploid) 37.492
CNS0095613Golden flower (tetraploid) 17.811
CNS0095614Golden flower (tetraploid) 29.363
CNS0095615Golden flower (tetraploid) 39.550
CRA001975CRR073297Stem 18.952
CRR073298Stem 28.816
CRR073299Stem 311.524
CRR073300Leaf 110.875
CRR073301Leaf 29.446
CRR073302Leaf 310.480
CRR073303Juvenile bud 112.415
CRR073304Juvenile bud 29.843
CRR073305Juvenile bud 314.783
CRR073306Third green 12.292
CRR073307Third green 22.343
CRR073308Third green 32.198
CRR073309Second white 14.805
CRR073310Second white 24.082
CRR073311Second white 34.726
CRR073312Silver flowering 15.629
CRR073313Silver flowering 26.293
CRR073314Silver flowering 34.547
CRR073315Gold flowering 17.033
CRR073316Gold flowering 28.206
CRR073317Gold flowering 311.803
CRR073318Tawny withering 113.815
CRR073319Tawny withering 211.106
CRR073320Tawny withering 312.848