Detail information of GWHGAAZE029706


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266692.10PREDICTED: tubby-like F-box protein 8 [Vitis vinifera]
Swissprottr|Q9FRH7|TLP10_ARATH0Tubby-like F-box protein 10
trEMBLtr|F6H1R9|F6H1R9_VITVI0Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}
TAIR10AT1G25280.13E-171tubby like protein 10

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3151513331520100-
GWHAAZE00000009mRNA3151513331520100-
GWHAAZE00000009exon3151997331520100-
GWHAAZE00000009exon3151863731519068-
GWHAAZE00000009exon3151798331518070-
GWHAAZE00000009exon3151696731517099-
GWHAAZE00000009exon3151513331515874-
GWHAAZE00000009five_prime_UTR3151997331520100-
GWHAAZE00000009five_prime_UTR3151898831519068-
GWHAAZE00000009CDS3151863731518987-
GWHAAZE00000009CDS3151798331518070-
GWHAAZE00000009CDS3151696731517099-
GWHAAZE00000009CDS3151513331515874-
Transcript Sequence

Network for GWHGAAZE029706

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box531043.50E-10
PF01167.19Tub1174327.50E-116
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.136
SRR3591706second leaf6.423
SRR3591707mature leaf4.712
SRR3591708Shoot apex9.684
SRR3591709Stem6.787
SRR3591710White floral bud4.578
SRR3591711White flower4.918
SRR3591712Green floral bud5.352
SRR3591713Yellow flower3.620
SRP173429 SRR8316895Juvenile bud stage 6.144
SRR8316896Juvenile bud stage 6.432
SRR8316897Juvenile bud stage 2.821
SRR8316894Third green stage 3.276
SRR8316900Third green stage 7.922
SRR8316901Third green stage 10.810
SRR8316898Complete white stage 1.758
SRR8316899Complete white stage 12.443
SRR8316903Complete white stage 4.620
SRR8316902Silver flowering stage1.800
SRR8316904Silver flowering stage3.378
SRR8316905Silver flowering stage1.347
SRR8316906Gold flowering stage 9.235
SRR8316907Gold flowering stage 7.548
SRR8316908Gold flowering stage 8.182
SRP132670SRR6706286Control8.182
SRR6706287Light intensity 50%6.556
SRR6706288Light intensity 20%7.502
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.821
CNS0095593Slightly white alabastrum(diploid) 26.661
CNS0095594Slightly white alabastrum(diploid) 36.793
CNS0095595Whole white alabastrum(diploid) 23.772
CNS0095596Whole white alabastrum(diploid) 32.894
CNS0095597Whole white alabastrum(diploid) 44.134
CNS0095598Silvery flower (diploied) 19.161
CNS0095599Silvery flower (diploied) 27.332
CNS0095600Silvery flower (diploied) 36.232
CNS0095601Golden flower (diploid) 18.944
CNS0095602Golden flower (diploid) 210.687
CNS0095603Golden flower (diploid) 310.369
CNS0095604Slightly white alabastrum(tetraploid) 12.699
CNS0095605Slightly white alabastrum(tetraploid) 21.885
CNS0095606Slightly white alabastrum(tetraploid) 36.452
CNS0095607Whole white alabastrum(tetraploid) 11.059
CNS0095608Whole white alabastrum(tetraploid) 20.459
CNS0095609Whole white alabastrum(tetraploid) 31.689
CNS0095610Silvery flower (tetraploid) 12.397
CNS0095611Silvery flower (tetraploid) 21.988
CNS0095612Silvery flower (tetraploid) 32.278
CNS0095613Golden flower (tetraploid) 12.310
CNS0095614Golden flower (tetraploid) 23.039
CNS0095615Golden flower (tetraploid) 35.109
CRA001975CRR073297Stem 18.503
CRR073298Stem 28.972
CRR073299Stem 312.440
CRR073300Leaf 114.002
CRR073301Leaf 211.121
CRR073302Leaf 310.479
CRR073303Juvenile bud 113.131
CRR073304Juvenile bud 212.372
CRR073305Juvenile bud 316.424
CRR073306Third green 12.709
CRR073307Third green 22.400
CRR073308Third green 33.558
CRR073309Second white 16.079
CRR073310Second white 24.999
CRR073311Second white 37.046
CRR073312Silver flowering 110.549
CRR073313Silver flowering 29.505
CRR073314Silver flowering 35.756
CRR073315Gold flowering 110.004
CRR073316Gold flowering 29.620
CRR073317Gold flowering 313.390
CRR073318Tawny withering 114.886
CRR073319Tawny withering 211.863
CRR073320Tawny withering 311.028