Detail information of GWHGAAZE029712


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010260914.10PREDICTED: serine decarboxylase-like [Nelumbo nucifera]
COGYP_001865119.12E-104histidine decarboxylase
Swissprottr|Q9MA74|SDC1_ARATH0Serine decarboxylase
trEMBLtr|I1MDT8|I1MDT8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G05630.1}
TAIR10AT1G43710.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3169459831698688-
GWHAAZE00000009mRNA3169459831698688-
GWHAAZE00000009exon3169459831695026-
GWHAAZE00000009exon3169595831696091-
GWHAAZE00000009exon3169624431696359-
GWHAAZE00000009exon3169644831696679-
GWHAAZE00000009exon3169836131698688-
GWHAAZE00000009CDS3169836131698688-
GWHAAZE00000009CDS3169644831696679-
GWHAAZE00000009CDS3169624431696359-
GWHAAZE00000009CDS3169595831696091-
GWHAAZE00000009CDS3169459831695026-
Transcript Sequence

Network for GWHGAAZE029712

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00282.20Pyridoxal_deC2253781.50E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01590hdc, HDC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Histidine metabolismmap00340

Gene Ontology

GO term OntologyName
GO:0019752biological_processcarboxylic acid metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0016831molecular_functioncarboxy-lyase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf107.873
SRR3591706second leaf83.136
SRR3591707mature leaf125.360
SRR3591708Shoot apex153.757
SRR3591709Stem114.647
SRR3591710White floral bud86.074
SRR3591711White flower75.783
SRR3591712Green floral bud139.717
SRR3591713Yellow flower52.385
SRP173429 SRR8316895Juvenile bud stage 63.469
SRR8316896Juvenile bud stage 93.787
SRR8316897Juvenile bud stage 44.468
SRR8316894Third green stage 41.581
SRR8316900Third green stage 120.240
SRR8316901Third green stage 117.590
SRR8316898Complete white stage 30.052
SRR8316899Complete white stage 146.015
SRR8316903Complete white stage 46.559
SRR8316902Silver flowering stage28.666
SRR8316904Silver flowering stage40.872
SRR8316905Silver flowering stage17.681
SRR8316906Gold flowering stage 86.506
SRR8316907Gold flowering stage 75.107
SRR8316908Gold flowering stage 89.666
SRP132670SRR6706286Control138.666
SRR6706287Light intensity 50%138.562
SRR6706288Light intensity 20%143.968
CNP0000432CNS0095592Slightly white alabastrum(diploid) 183.982
CNS0095593Slightly white alabastrum(diploid) 284.087
CNS0095594Slightly white alabastrum(diploid) 367.133
CNS0095595Whole white alabastrum(diploid) 288.487
CNS0095596Whole white alabastrum(diploid) 390.825
CNS0095597Whole white alabastrum(diploid) 490.431
CNS0095598Silvery flower (diploied) 192.632
CNS0095599Silvery flower (diploied) 268.845
CNS0095600Silvery flower (diploied) 380.028
CNS0095601Golden flower (diploid) 1105.510
CNS0095602Golden flower (diploid) 2126.117
CNS0095603Golden flower (diploid) 3118.680
CNS0095604Slightly white alabastrum(tetraploid) 1137.538
CNS0095605Slightly white alabastrum(tetraploid) 2111.534
CNS0095606Slightly white alabastrum(tetraploid) 3235.669
CNS0095607Whole white alabastrum(tetraploid) 199.957
CNS0095608Whole white alabastrum(tetraploid) 282.837
CNS0095609Whole white alabastrum(tetraploid) 3184.756
CNS0095610Silvery flower (tetraploid) 163.050
CNS0095611Silvery flower (tetraploid) 294.182
CNS0095612Silvery flower (tetraploid) 371.290
CNS0095613Golden flower (tetraploid) 153.569
CNS0095614Golden flower (tetraploid) 272.835
CNS0095615Golden flower (tetraploid) 379.364
CRA001975CRR073297Stem 1141.080
CRR073298Stem 2138.409
CRR073299Stem 3130.254
CRR073300Leaf 1176.077
CRR073301Leaf 2166.685
CRR073302Leaf 3167.104
CRR073303Juvenile bud 1151.794
CRR073304Juvenile bud 2117.649
CRR073305Juvenile bud 3142.385
CRR073306Third green 154.271
CRR073307Third green 243.383
CRR073308Third green 354.180
CRR073309Second white 154.505
CRR073310Second white 255.252
CRR073311Second white 349.033
CRR073312Silver flowering 165.134
CRR073313Silver flowering 282.601
CRR073314Silver flowering 361.565
CRR073315Gold flowering 173.058
CRR073316Gold flowering 281.180
CRR073317Gold flowering 3115.552
CRR073318Tawny withering 1103.607
CRR073319Tawny withering 281.206
CRR073320Tawny withering 383.790