Detail information of GWHGAAZE029721


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010261083.11.33948E-35PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera]
Swissprottr|A2ZVY5|C3H9_ORYSJ3E-10Zinc finger CCCH domain-containing protein 9
trEMBLtr|A0A0A0K529|A0A0A0K529_CUCSA1E-28Uncharacterized protein {ECO:0000313|EMBL:KGN44014.1}
TAIR10AT1G68200.10.0000008Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3182497831827197-
GWHAAZE00000009mRNA3182497831827197-
GWHAAZE00000009exon3182705731827197-
GWHAAZE00000009exon3182547731825536-
GWHAAZE00000009exon3182497831825262-
GWHAAZE00000009CDS3182705731827197-
GWHAAZE00000009CDS3182547731825536-
GWHAAZE00000009CDS3182497831825262-
Transcript Sequence

Network for GWHGAAZE029721

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.25zf-CCCH26522.70E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.466
SRR3591706second leaf0.275
SRR3591707mature leaf0.823
SRR3591708Shoot apex0.368
SRR3591709Stem0.862
SRR3591710White floral bud0.359
SRR3591711White flower0.128
SRR3591712Green floral bud2.559
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.397
SRR8316896Juvenile bud stage 1.227
SRR8316897Juvenile bud stage 0.152
SRR8316894Third green stage 0.412
SRR8316900Third green stage 2.263
SRR8316901Third green stage 2.636
SRR8316898Complete white stage 0.216
SRR8316899Complete white stage 2.500
SRR8316903Complete white stage 0.292
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.220
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.400
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control3.684
SRR6706287Light intensity 50%3.319
SRR6706288Light intensity 20%3.595
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.419
CNS0095593Slightly white alabastrum(diploid) 20.592
CNS0095594Slightly white alabastrum(diploid) 30.082
CNS0095595Whole white alabastrum(diploid) 21.066
CNS0095596Whole white alabastrum(diploid) 31.129
CNS0095597Whole white alabastrum(diploid) 40.227
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.166
CNS0095600Silvery flower (diploied) 30.359
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.374
CNS0095603Golden flower (diploid) 30.535
CNS0095604Slightly white alabastrum(tetraploid) 11.007
CNS0095605Slightly white alabastrum(tetraploid) 20.348
CNS0095606Slightly white alabastrum(tetraploid) 31.668
CNS0095607Whole white alabastrum(tetraploid) 10.553
CNS0095608Whole white alabastrum(tetraploid) 20.376
CNS0095609Whole white alabastrum(tetraploid) 31.582
CNS0095610Silvery flower (tetraploid) 10.223
CNS0095611Silvery flower (tetraploid) 20.123
CNS0095612Silvery flower (tetraploid) 30.141
CNS0095613Golden flower (tetraploid) 10.065
CNS0095614Golden flower (tetraploid) 20.178
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 13.317
CRR073298Stem 23.218
CRR073299Stem 32.937
CRR073300Leaf 14.457
CRR073301Leaf 22.943
CRR073302Leaf 33.546
CRR073303Juvenile bud 15.922
CRR073304Juvenile bud 25.902
CRR073305Juvenile bud 34.192
CRR073306Third green 10.000
CRR073307Third green 20.044
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.170
CRR073311Second white 30.198
CRR073312Silver flowering 10.055
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.446
CRR073315Gold flowering 10.234
CRR073316Gold flowering 20.804
CRR073317Gold flowering 30.240
CRR073318Tawny withering 11.557
CRR073319Tawny withering 23.273
CRR073320Tawny withering 30.350