Gene detail

Detail information of GWHGAAZE029723

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP30704.1	0	hypothetical protein JCGZ_16402 [Jatropha curcas]
COG	YP_004464029.1	7E-147	glycoside hydrolase
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	0	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|A0A067KFX5\|A0A067KFX5_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP30704.1}
TAIR10	AT5G64570.1	0	beta-D-xylosidase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	31842709	31846561	-
GWHAAZE00000009	mRNA	31842709	31846561	-
GWHAAZE00000009	exon	31842709	31843280	-
GWHAAZE00000009	exon	31843430	31843840	-
GWHAAZE00000009	exon	31844070	31844420	-
GWHAAZE00000009	exon	31844614	31844711	-
GWHAAZE00000009	exon	31844972	31845141	-
GWHAAZE00000009	exon	31845229	31845516	-
GWHAAZE00000009	exon	31846226	31846561	-
GWHAAZE00000009	CDS	31846226	31846561	-
GWHAAZE00000009	CDS	31845229	31845516	-
GWHAAZE00000009	CDS	31844972	31845141	-
GWHAAZE00000009	CDS	31844614	31844711	-
GWHAAZE00000009	CDS	31844070	31844420	-
GWHAAZE00000009	CDS	31843430	31843840	-
GWHAAZE00000009	CDS	31842709	31843280	-

Transcript Sequence
>GWHTAAZE029757 CAGTCGCCGCCGGCGTTTGCCTGCGACGTGGTGGCAAATCCGGCGGTGGCAAACTTCACGTTCTGTGATCAGAGTAAAGGGATTGAGGAGAGAGTGATGGATTTGGTGAGTAGATTGAATTTACAAGAGAAAATTGGGTATACAGGGGATGCATCGGGGAATGTGAGCCGGTTTGGAATTCCGAAGTACGAGTGGTGGTCGGAAGCTCTGCACGGTGTCTCCTTCACCGGTCCGGGGACACATTTCTCTGAAGTGGTCCCCGGAGCGACGAGCTTCCCTCAAGTCATTCTTACAGCGGCTTCGTTCAATGTCACTCTCTTTGAAACGATTGGAAAGGTGGTCTCAACCGAAGCAAGAGCAATGTACAACGTAGGTTTAGCTGGATTGACATTTTGGTCGCCAAACGTTAATATTTTCCGCGATCCAAGGTGGGGAAGAGGCCAAGAAACTCCAGGAGAAGATCCTCTACTCGTGAGTAAGTACGGGGTAGCATATGTAAAAGGTTTACAGCAAACAGATGATGGCAACAAAAATCGCCTTAAAGTTGCCGCTGCATGTAAACATTACACTGCCTATGATGTTGATAACTGGAAAGGGATCGACCGATACCATTTCAATGCTGTGGTAACAAAGCAAGATTTGGAGGATTCATTTGAACCCCCATTCAAGAGCTGTGTTATTGATGGAAATGTTGCAAGTGTGATGTGTTCCTACAACCAAGTAAACGGGGTGCCAACTTGTGCTAATGCAGAACTTTTAAAAGATGTGATTAGAGGCCAATGGGGATTAAATGGATACATATCTTCGGATTGCGATTCATTAGAAGTGATGTTCGATGACCAACACTATACTAAAACACCTGAGGAAACTGTAGCTTTGGCTCTATTGGCAGGTGTAGAGGTGGATTGTGGGACTTTCTATGCCCAGCACGCTCAAGCTGCAATAACAGCAGGGCTAGTGAATGAATCATATGTGGACATGGCAGTGTCGCACAATTTTGAGACATTGATGCGGCTTGGGTTCTTTGATGGTGACCCGAGCAAGCAAATGTACGGGGACTTAGGTCCTAAAGACGTATGCACCCCGGCTAACCAGGAGCTAGCCCGCGAAACAGCCAGGCAAGGCATTGTGTTGTTGAAAAACAGCCCCAATTCACTTCCTTTATCTCCCAATGCCATCAGGTCCCTAGCTGTAATTGGACCCAATGCTAATGCCACAAACCCAATGATTGGAAACTACGAAGGTATTCCTTGCGGATTTATAAGTCCTCTGGAGGGCCTAACTGCTGTAGTTCCAACGGTTTACGAACCCGGTTGTGCTCACGTGTCATGTATCGCGGTCATGATGCAAGAGATTACGAATGCAGCATCCACAGCGGATGCTGTAGTTCTATTAGTGGGTTCGGATCTATCCATCGAGGCAGAGTCTCTCGACAGGCTAGATATCACTCTTCCAGGTGAACAACAACTCTTAGTAACTGCCACAGCAAACGCTTCCAAGGGGCCGGTGATTCTTGTTGTTATGTCGGGAGGAGGAATGGATATAACATTCGCGAAAAATAACCCCAAAATCACCAGTATTATGTGGGTAGGGTTCCCTGGCCAAGCCGGTGGAGCTGCAATAGCTGACGTGATCTTCGGGTTTTACAATCCAAGTGGAAGACTACCCATGACATGGTATCCACAGTCATACGTGCAGAAAGTGAACCTGACGACCATGAACATGAGACCGGACAATGCCACCGGTTACCCTGGCCGGACGTACCGGTTTTACACGGGGGAAACAGTATACCAATTCGGAGATGGACTGAGCTATTCCACGTTTGAGCATCTACTAGTAGAAGCACCTAAACGTGTATCGGTCCCACTAAACCAAGGGCATATGTGTAGGTTATCGATGTGCAAGTCGATCAACGTAGCGGAGCAAAGTTGCAACAACATGACTTTTGACATTCATTTGCTAGTTCGAAACATGGGGCAAGTGGCCGGGAGCCACACCGTGCTCTTGTTCTGGAGCTCTCCCCCGGTGCACAATGCGCCACAAAAGGAATTGGTTGGGTTTGAGAAGGTGTATTTGGAACCACAAGGGAATACAAGTGTTAAGTTCAATATAGATGTTTGCAAGCATTTGAGAGTGGTTGATGAGTCTGGGAACAGAAAATTGGCATTGGGACTACATTTGCTTCACGTGGGAAACTTGAAACACCCATTGACTGTGAGGATTTAG

Network for GWHGAAZE029723

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	87	331	1.80E-38
PF01915.23	Glyco_hydro_3_C	376	605	4.20E-49
PF14310.7	Fn3-like	665	732	1.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15920	XYL4	Metabolic pathways	map01100
K15920	XYL4	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.103
	SRR3591706	second leaf	0.044
	SRR3591707	mature leaf	0.074
	SRR3591708	Shoot apex	0.139
	SRR3591709	Stem	0.275
	SRR3591710	White floral bud	0.995
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	32.701
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	21.833
	SRR8316896	Juvenile bud stage	85.988
	SRR8316897	Juvenile bud stage	33.179
	SRR8316894	Third green stage	26.656
	SRR8316900	Third green stage	34.751
	SRR8316901	Third green stage	63.576
	SRR8316898	Complete white stage	0.061
	SRR8316899	Complete white stage	0.121
	SRR8316903	Complete white stage	0.077
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.017
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	14.048
	SRR6706287	Light intensity 50%	11.009
	SRR6706288	Light intensity 20%	8.521
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	116.559
	CNS0095593	Slightly white alabastrum(diploid) 2	58.267
	CNS0095594	Slightly white alabastrum(diploid) 3	143.755
	CNS0095595	Whole white alabastrum(diploid) 2	43.860
	CNS0095596	Whole white alabastrum(diploid) 3	62.219
	CNS0095597	Whole white alabastrum(diploid) 4	29.333
	CNS0095598	Silvery flower (diploied) 1	0.201
	CNS0095599	Silvery flower (diploied) 2	0.201
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.079
	CNS0095602	Golden flower (diploid) 2	0.016
	CNS0095603	Golden flower (diploid) 3	0.031
	CNS0095604	Slightly white alabastrum(tetraploid) 1	95.939
	CNS0095605	Slightly white alabastrum(tetraploid) 2	97.891
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.096
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.336
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.808
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.077
	CNS0095612	Silvery flower (tetraploid) 3	0.174
	CNS0095613	Golden flower (tetraploid) 1	0.024
	CNS0095614	Golden flower (tetraploid) 2	0.059
	CNS0095615	Golden flower (tetraploid) 3	0.217
CRA001975	CRR073297	Stem 1	36.185
	CRR073298	Stem 2	56.435
	CRR073299	Stem 3	37.255
	CRR073300	Leaf 1	19.448
	CRR073301	Leaf 2	42.541
	CRR073302	Leaf 3	37.339
	CRR073303	Juvenile bud 1	3.788
	CRR073304	Juvenile bud 2	1.019
	CRR073305	Juvenile bud 3	0.073
	CRR073306	Third green 1	0.332
	CRR073307	Third green 2	0.172
	CRR073308	Third green 3	0.455
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.068
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.280
	CRR073313	Silver flowering 2	0.185
	CRR073314	Silver flowering 3	0.493
	CRR073315	Gold flowering 1	0.233
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.110
	CRR073318	Tawny withering 1	3.607
	CRR073319	Tawny withering 2	1.325
	CRR073320	Tawny withering 3	5.902