Gene detail

Detail information of GWHGAAZE029726

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97477.1	0	unnamed protein product [Coffea canephora]
COG	YP_004446524.1	2E-17	hypothetical protein
Swissprot	tr\|Q38942\|RAE1_ARATH	0	Protein RAE1 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A068TN79\|A0A068TN79_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97477.1}
TAIR10	AT1G80670.1	3E-179	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	31889578	31896181	-
GWHAAZE00000009	mRNA	31889578	31896181	-
GWHAAZE00000009	exon	31889578	31889628	-
GWHAAZE00000009	exon	31890071	31890151	-
GWHAAZE00000009	exon	31890311	31890382	-
GWHAAZE00000009	exon	31890874	31890951	-
GWHAAZE00000009	exon	31891303	31891431	-
GWHAAZE00000009	exon	31892616	31892696	-
GWHAAZE00000009	exon	31893779	31893920	-
GWHAAZE00000009	exon	31894380	31894573	-
GWHAAZE00000009	exon	31894657	31894734	-
GWHAAZE00000009	exon	31895472	31895558	-
GWHAAZE00000009	exon	31896128	31896181	-
GWHAAZE00000009	CDS	31896128	31896181	-
GWHAAZE00000009	CDS	31895472	31895558	-
GWHAAZE00000009	CDS	31894657	31894734	-
GWHAAZE00000009	CDS	31894380	31894573	-
GWHAAZE00000009	CDS	31893779	31893920	-
GWHAAZE00000009	CDS	31892616	31892696	-
GWHAAZE00000009	CDS	31891303	31891431	-
GWHAAZE00000009	CDS	31890874	31890951	-
GWHAAZE00000009	CDS	31890311	31890382	-
GWHAAZE00000009	CDS	31890071	31890151	-
GWHAAZE00000009	CDS	31889578	31889628	-

Transcript Sequence
>GWHTAAZE029760 ATGTCCACTTTCGGCAGTGCAGCTACGAATCCAAATCCTAATAGGTCAACTGAGGTAGCTCAACCTCCCAGTGATTCTATATCAAGTCTTACTTTCAGTCCCAAGGCCAATTTCCTAGTTGCTACTTCATGGGATAACCAGGTACGATGTTGGGAGGTAATGAAGAATGGGACCTCTGTTGGCACTGTACCAAAGGCGTCGATATCACATGATCAACCGGTTTTATGCTCAGCCTGGAAGGACGACGGAACAACGGTCTTCTCTGCAGGTTGTGACAAACAAGTCAAGATGTGGCCTTTATTATCGGGTGGCCAGCCAGTAACTGTAGCCATGCATGATGCACCCATTAAGGAGATCGCTTGGGTTCCAGAGATGAACTTCTTAGTCACTGGTAGTTGGGACAAGACTCTAAGGTACTGGGATTTGAGACAGCCAAATCCAGTGCACGTTCAACAACTTCCTGAGCGCTGCTATGCACTTTCAGTGAGATATCCTCTGATGGTTGTTGGCACTGCAGATAGAAATCTTATTGTTTTCAATTTGCAGAACCCTCAGGCTGAGTTCAAGAGAATCACTTCACCCTTGAAGTACCAAACAAGGTGTGTTGCAGCCTTTCCAGATCAACAAGGTTTCTTGGTTGGATCGATTGAAGGTAGGGTAGGGGTACACCATCTTGACGATTCACAACAAAGTAAAAACTTTACTTTCAAGTGCCACAGAGAGGGCAATGAGATATACTCAGTCAACTCACTAAACTTCCATCCTGTACATCACACATTTGCTACTGCGGGATCTGATGGTGCTTTTAACTTTTGGGACAAAGATAGCAAACAAAGACTCAAGGCCATGTCAAGGTGTAGTCAACCGATACCCTGCAGTACGTTTAACAATGATGGATCAATCTATGCATATTCGGTGTGTTATGATTGGAGTAAGGGTGCAGAAAATCATAATCCAGCAACAGCAAAGAACTACATCTTCCTGCACTTGCCACAGGAGTCTGAGGTGAAAGGCAAACCGCGTATTGGAACCGGGGGCAGAAAGTGA

Network for GWHGAAZE029726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	26	51	0.0022
PF00400.33	WD40	69	98	0.05
PF00400.33	WD40	112	141	0.0007
PF00400.33	WD40	234	273	0.029

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14298	RAE1, GLE2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.102
	SRR3591706	second leaf	36.687
	SRR3591707	mature leaf	28.653
	SRR3591708	Shoot apex	67.371
	SRR3591709	Stem	36.824
	SRR3591710	White floral bud	45.443
	SRR3591711	White flower	52.084
	SRR3591712	Green floral bud	52.840
	SRR3591713	Yellow flower	51.197
SRP173429	SRR8316895	Juvenile bud stage	36.361
	SRR8316896	Juvenile bud stage	52.941
	SRR8316897	Juvenile bud stage	29.472
	SRR8316894	Third green stage	22.351
	SRR8316900	Third green stage	53.150
	SRR8316901	Third green stage	55.325
	SRR8316898	Complete white stage	19.119
	SRR8316899	Complete white stage	59.990
	SRR8316903	Complete white stage	29.799
	SRR8316902	Silver flowering stage	21.691
	SRR8316904	Silver flowering stage	29.381
	SRR8316905	Silver flowering stage	14.517
	SRR8316906	Gold flowering stage	49.376
	SRR8316907	Gold flowering stage	44.705
	SRR8316908	Gold flowering stage	52.155
SRP132670	SRR6706286	Control	41.880
	SRR6706287	Light intensity 50%	45.705
	SRR6706288	Light intensity 20%	48.478
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.452
	CNS0095593	Slightly white alabastrum(diploid) 2	45.597
	CNS0095594	Slightly white alabastrum(diploid) 3	37.111
	CNS0095595	Whole white alabastrum(diploid) 2	37.895
	CNS0095596	Whole white alabastrum(diploid) 3	33.632
	CNS0095597	Whole white alabastrum(diploid) 4	32.724
	CNS0095598	Silvery flower (diploied) 1	43.536
	CNS0095599	Silvery flower (diploied) 2	37.158
	CNS0095600	Silvery flower (diploied) 3	36.360
	CNS0095601	Golden flower (diploid) 1	31.806
	CNS0095602	Golden flower (diploid) 2	36.195
	CNS0095603	Golden flower (diploid) 3	38.949
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.382
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.737
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.341
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.062
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.424
	CNS0095610	Silvery flower (tetraploid) 1	40.609
	CNS0095611	Silvery flower (tetraploid) 2	39.307
	CNS0095612	Silvery flower (tetraploid) 3	28.712
	CNS0095613	Golden flower (tetraploid) 1	25.522
	CNS0095614	Golden flower (tetraploid) 2	40.408
	CNS0095615	Golden flower (tetraploid) 3	31.925
CRA001975	CRR073297	Stem 1	68.829
	CRR073298	Stem 2	57.634
	CRR073299	Stem 3	58.821
	CRR073300	Leaf 1	69.478
	CRR073301	Leaf 2	65.575
	CRR073302	Leaf 3	64.030
	CRR073303	Juvenile bud 1	61.994
	CRR073304	Juvenile bud 2	46.058
	CRR073305	Juvenile bud 3	64.704
	CRR073306	Third green 1	16.719
	CRR073307	Third green 2	17.890
	CRR073308	Third green 3	18.117
	CRR073309	Second white 1	27.029
	CRR073310	Second white 2	34.135
	CRR073311	Second white 3	27.131
	CRR073312	Silver flowering 1	31.788
	CRR073313	Silver flowering 2	33.348
	CRR073314	Silver flowering 3	26.041
	CRR073315	Gold flowering 1	39.331
	CRR073316	Gold flowering 2	57.100
	CRR073317	Gold flowering 3	39.770
	CRR073318	Tawny withering 1	56.086
	CRR073319	Tawny withering 2	50.776
	CRR073320	Tawny withering 3	55.744