Gene detail

Detail information of GWHGAAZE029727

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271770.1	3.9624E-113	PREDICTED: trimethylguanosine synthase [Vitis vinifera]
COG	YP_006592878.1	2E-34	hypothetical protein BN69_2776
trEMBL	tr\|F6HBY0\|F6HBY0_VITVI	1E-113	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49713.1}
TAIR10	AT1G30550.2	1E-74	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	31900832	31904555	+
GWHAAZE00000009	mRNA	31900832	31904555	+
GWHAAZE00000009	exon	31900832	31900994	+
GWHAAZE00000009	exon	31901822	31902071	+
GWHAAZE00000009	exon	31903652	31903787	+
GWHAAZE00000009	exon	31904005	31904096	+
GWHAAZE00000009	exon	31904360	31904555	+
GWHAAZE00000009	CDS	31900832	31900994	+
GWHAAZE00000009	CDS	31901822	31902071	+
GWHAAZE00000009	CDS	31903652	31903787	+
GWHAAZE00000009	CDS	31904005	31904096	+
GWHAAZE00000009	CDS	31904360	31904555	+

Transcript Sequence
>GWHTAAZE029761 AAAGAGAAGAAATACATACACAACTTTTACGATAGAGGGGAGAGAGCTGAAGTTGAGGCTGAGGATAAATCAATGAACAAAATGCTATCAATCCTCAACTTCCGCATAAAGAAACGACGAAAGCTATCAAAACGCCGACGACTAAAGCTCTCAAAGCCCAAAGCGAAAATTAAGAGGAAAGCGAAGCCCAAGGCTAAAGAAGCACAAGGGGTAACTCCACTGGTTGAGAAGTATTGGGCTCAAAGGTACAATCTGTTCTCGAGATATGATGAGGGTATCAAAATGGACGAAGAAGGCTGGTTCTCTGTTACACCTGAAGTGATTGCTATCAGGCAAGCTGAGCGGAGTGGTGGTGGTCTCGTTATTGATTGTTTCGCTGGTGTTGGTGGCAATGCCATTCAATTTGCTGCAATGGGTTACCATGTTGTCGCTATTGACATTGATCCTGATAGGGTTGCTTTGGCATATAACAATGCAAAAATCTATGGTGTAGAAAAGTATATTGATTTCGTCGTGGGGGACTTTTTCCAACTAGCGCCATCTCTCAAGGGGAACGTAGCATTTCTTTCACCACCATGGGGGGGTCCATCATATACGAAGACTCAGAATTTTACCCTTGACTTACTTAAGCCAAAAGATGGGTATTCGTTATTTAAAGCTGCTCAAACAATAGCACCAAACATTACAATGTTCTTACCTCGAAATATGGACTTAAACCAAGTAGAGCAACTCTCTTGGTTGTCTTGTCCTCCTCTAGATGTCGAGGTACTTGCTTTACTGTCCATACATTTGATTTGTGATGAAATGATGAATATATTATCTGCCCTTTCACACTAG

Network for GWHGAAZE029727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09445.11	Methyltransf_15	120	244	2.50E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14292	TGS1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0001510	biological_process	RNA methylation
GO:0009452	biological_process	7-methylguanosine RNA capping
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.506
	SRR3591706	second leaf	7.977
	SRR3591707	mature leaf	7.829
	SRR3591708	Shoot apex	12.144
	SRR3591709	Stem	9.818
	SRR3591710	White floral bud	7.956
	SRR3591711	White flower	10.580
	SRR3591712	Green floral bud	6.957
	SRR3591713	Yellow flower	9.027
SRP173429	SRR8316895	Juvenile bud stage	13.002
	SRR8316896	Juvenile bud stage	19.170
	SRR8316897	Juvenile bud stage	7.926
	SRR8316894	Third green stage	6.070
	SRR8316900	Third green stage	16.310
	SRR8316901	Third green stage	14.225
	SRR8316898	Complete white stage	4.755
	SRR8316899	Complete white stage	14.731
	SRR8316903	Complete white stage	10.055
	SRR8316902	Silver flowering stage	5.994
	SRR8316904	Silver flowering stage	8.317
	SRR8316905	Silver flowering stage	3.387
	SRR8316906	Gold flowering stage	12.759
	SRR8316907	Gold flowering stage	12.049
	SRR8316908	Gold flowering stage	16.262
SRP132670	SRR6706286	Control	16.327
	SRR6706287	Light intensity 50%	15.501
	SRR6706288	Light intensity 20%	17.505
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.786
	CNS0095593	Slightly white alabastrum(diploid) 2	11.012
	CNS0095594	Slightly white alabastrum(diploid) 3	9.124
	CNS0095595	Whole white alabastrum(diploid) 2	10.167
	CNS0095596	Whole white alabastrum(diploid) 3	8.082
	CNS0095597	Whole white alabastrum(diploid) 4	9.865
	CNS0095598	Silvery flower (diploied) 1	13.981
	CNS0095599	Silvery flower (diploied) 2	7.084
	CNS0095600	Silvery flower (diploied) 3	11.584
	CNS0095601	Golden flower (diploid) 1	10.551
	CNS0095602	Golden flower (diploid) 2	12.108
	CNS0095603	Golden flower (diploid) 3	12.941
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.417
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.455
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.299
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.580
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.582
	CNS0095610	Silvery flower (tetraploid) 1	15.743
	CNS0095611	Silvery flower (tetraploid) 2	12.090
	CNS0095612	Silvery flower (tetraploid) 3	6.790
	CNS0095613	Golden flower (tetraploid) 1	4.396
	CNS0095614	Golden flower (tetraploid) 2	10.785
	CNS0095615	Golden flower (tetraploid) 3	7.258
CRA001975	CRR073297	Stem 1	13.097
	CRR073298	Stem 2	12.746
	CRR073299	Stem 3	8.511
	CRR073300	Leaf 1	11.491
	CRR073301	Leaf 2	9.510
	CRR073302	Leaf 3	8.135
	CRR073303	Juvenile bud 1	7.735
	CRR073304	Juvenile bud 2	3.946
	CRR073305	Juvenile bud 3	7.504
	CRR073306	Third green 1	1.635
	CRR073307	Third green 2	2.996
	CRR073308	Third green 3	4.036
	CRR073309	Second white 1	4.310
	CRR073310	Second white 2	2.932
	CRR073311	Second white 3	2.406
	CRR073312	Silver flowering 1	0.786
	CRR073313	Silver flowering 2	2.465
	CRR073314	Silver flowering 3	1.096
	CRR073315	Gold flowering 1	7.040
	CRR073316	Gold flowering 2	10.900
	CRR073317	Gold flowering 3	5.470
	CRR073318	Tawny withering 1	10.568
	CRR073319	Tawny withering 2	5.998
	CRR073320	Tawny withering 3	6.373